Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01985

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01980 and SGL_RS01985 are separated by 67 nucleotidesSGL_RS01985 and SGL_RS01990 are separated by 72 nucleotides SGL_RS01980: SGL_RS01980 - AraC family transcriptional regulator, at 27,990 to 29,030 _RS01980 SGL_RS01985: SGL_RS01985 - class I SAM-dependent methyltransferase, at 29,098 to 29,895 _RS01985 SGL_RS01990: SGL_RS01990 - TonB-dependent siderophore receptor, at 29,968 to 32,454 _RS01990 Position (kb) 29 30Strain fitness (log2 ratio) -1 0 1at 28.627 kb on + strand, within SGL_RS01980at 28.835 kb on + strand, within SGL_RS01980at 28.849 kb on - strand, within SGL_RS01980at 29.294 kb on + strand, within SGL_RS01985at 29.507 kb on + strand, within SGL_RS01985at 29.746 kb on + strand, within SGL_RS01985at 29.951 kb on - strandat 29.964 kb on - strandat 30.023 kb on - strandat 30.047 kb on + strandat 30.202 kb on + strandat 30.550 kb on + strand, within SGL_RS01990at 30.550 kb on + strand, within SGL_RS01990at 30.603 kb on + strand, within SGL_RS01990at 30.719 kb on + strand, within SGL_RS01990at 30.832 kb on + strand, within SGL_RS01990

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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28,627 + SGL_RS01980 0.61 -0.2
28,835 + SGL_RS01980 0.81 +0.3
28,849 - SGL_RS01980 0.83 +0.4
29,294 + SGL_RS01985 0.25 +0.0
29,507 + SGL_RS01985 0.51 +0.8
29,746 + SGL_RS01985 0.81 +0.2
29,951 - -0.2
29,964 - +0.2
30,023 - +0.3
30,047 + +0.1
30,202 + +0.6
30,550 + SGL_RS01990 0.23 +1.2
30,550 + SGL_RS01990 0.23 -0.2
30,603 + SGL_RS01990 0.26 -0.1
30,719 + SGL_RS01990 0.30 +0.3
30,832 + SGL_RS01990 0.35 +0.2

Or see this region's nucleotide sequence