Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01065

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01055 and SGL_RS01060 overlap by 4 nucleotidesSGL_RS01060 and SGL_RS01065 are separated by 3 nucleotides SGL_RS01055: SGL_RS01055 - CRISPR-associated protein Csx18, at 88,262 to 88,630 _RS01055 SGL_RS01060: SGL_RS01060 - CRISPR-associated endonuclease Cas1, at 88,627 to 89,616 _RS01060 SGL_RS01065: SGL_RS01065 - CRISPR-associated endonuclease Cas2, at 89,620 to 89,898 _RS01065 Position (kb) 89 90Strain fitness (log2 ratio) -1 0 1at 88.751 kb on - strand, within SGL_RS01060at 88.762 kb on + strand, within SGL_RS01060at 88.767 kb on + strand, within SGL_RS01060at 88.769 kb on - strand, within SGL_RS01060at 88.770 kb on - strand, within SGL_RS01060at 88.897 kb on - strand, within SGL_RS01060at 88.897 kb on - strand, within SGL_RS01060at 88.910 kb on + strand, within SGL_RS01060at 89.038 kb on - strand, within SGL_RS01060at 89.040 kb on - strand, within SGL_RS01060at 89.054 kb on - strand, within SGL_RS01060at 89.080 kb on + strand, within SGL_RS01060at 89.259 kb on + strand, within SGL_RS01060at 89.263 kb on + strand, within SGL_RS01060at 89.272 kb on - strand, within SGL_RS01060at 89.341 kb on + strand, within SGL_RS01060at 89.744 kb on - strand, within SGL_RS01065at 89.824 kb on + strand, within SGL_RS01065at 89.825 kb on + strand, within SGL_RS01065at 89.825 kb on + strand, within SGL_RS01065at 89.830 kb on + strand, within SGL_RS01065at 89.866 kb on - strand, within SGL_RS01065at 89.866 kb on - strand, within SGL_RS01065at 89.868 kb on + strand, within SGL_RS01065at 90.099 kb on + strandat 90.148 kb on - strandat 90.318 kb on - strandat 90.579 kb on - strandat 90.727 kb on + strandat 90.735 kb on - strandat 90.735 kb on - strandat 90.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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88,751 - SGL_RS01060 0.13 -0.1
88,762 + SGL_RS01060 0.14 -0.2
88,767 + SGL_RS01060 0.14 +0.6
88,769 - SGL_RS01060 0.14 +0.3
88,770 - SGL_RS01060 0.14 +0.7
88,897 - SGL_RS01060 0.27 +0.1
88,897 - SGL_RS01060 0.27 -0.1
88,910 + SGL_RS01060 0.29 +0.4
89,038 - SGL_RS01060 0.42 +0.1
89,040 - SGL_RS01060 0.42 -0.8
89,054 - SGL_RS01060 0.43 -0.2
89,080 + SGL_RS01060 0.46 +0.1
89,259 + SGL_RS01060 0.64 +0.0
89,263 + SGL_RS01060 0.64 -0.0
89,272 - SGL_RS01060 0.65 +0.1
89,341 + SGL_RS01060 0.72 +0.2
89,744 - SGL_RS01065 0.44 +0.5
89,824 + SGL_RS01065 0.73 +0.7
89,825 + SGL_RS01065 0.73 +0.7
89,825 + SGL_RS01065 0.73 -0.3
89,830 + SGL_RS01065 0.75 -0.1
89,866 - SGL_RS01065 0.88 +0.3
89,866 - SGL_RS01065 0.88 +0.2
89,868 + SGL_RS01065 0.89 +0.2
90,099 + -0.0
90,148 - -0.3
90,318 - -1.5
90,579 - +0.2
90,727 + -0.1
90,735 - +0.1
90,735 - -0.1
90,791 + +0.9

Or see this region's nucleotide sequence