Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00065

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00060 and SGL_RS00065 are separated by 9 nucleotidesSGL_RS00065 and SGL_RS00070 overlap by 1 nucleotidesSGL_RS00070 and SGL_RS00075 are separated by 82 nucleotides SGL_RS00060: SGL_RS00060 - hypothetical protein, at 18,822 to 20,513 _RS00060 SGL_RS00065: SGL_RS00065 - LAGLIDADG endonuclease, at 20,523 to 21,479 _RS00065 SGL_RS00070: SGL_RS00070 - hypothetical protein, at 21,479 to 21,760 _RS00070 SGL_RS00075: SGL_RS00075 - HNH endonuclease domain-containing protein, at 21,843 to 23,219 _RS00075 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1at 19.573 kb on - strand, within SGL_RS00060at 19.578 kb on + strand, within SGL_RS00060at 19.770 kb on + strand, within SGL_RS00060at 19.987 kb on + strand, within SGL_RS00060at 20.941 kb on - strand, within SGL_RS00065at 21.507 kb on - strandat 21.657 kb on - strand, within SGL_RS00070at 21.735 kb on + strandat 21.783 kb on - strandat 22.100 kb on - strand, within SGL_RS00075

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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19,573 - SGL_RS00060 0.44 -0.1
19,578 + SGL_RS00060 0.45 -0.4
19,770 + SGL_RS00060 0.56 +1.1
19,987 + SGL_RS00060 0.69 +0.3
20,941 - SGL_RS00065 0.44 +0.6
21,507 - +0.1
21,657 - SGL_RS00070 0.63 +0.4
21,735 + +0.6
21,783 - -0.4
22,100 - SGL_RS00075 0.19 -0.1

Or see this region's nucleotide sequence