Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18170

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18165 and SGL_RS18170 are separated by 17 nucleotidesSGL_RS18170 and SGL_RS18175 are separated by 35 nucleotidesSGL_RS18175 and SGL_RS18180 are separated by 7 nucleotides SGL_RS18165: SGL_RS18165 - hypothetical protein, at 3,528,265 to 3,529,305 _RS18165 SGL_RS18170: SGL_RS18170 - PspA/IM30 family protein, at 3,529,323 to 3,529,994 _RS18170 SGL_RS18175: SGL_RS18175 - homocysteine S-methyltransferase family protein, at 3,530,030 to 3,530,971 _RS18175 SGL_RS18180: SGL_RS18180 - ABC transporter permease, at 3,530,979 to 3,531,755 _RS18180 Position (kb) 3529 3530Strain fitness (log2 ratio) -3 -2 -1 0 1at 3528.356 kb on + strandat 3528.368 kb on + strandat 3528.376 kb on - strand, within SGL_RS18165at 3528.398 kb on + strand, within SGL_RS18165at 3528.398 kb on + strand, within SGL_RS18165at 3528.499 kb on + strand, within SGL_RS18165at 3528.671 kb on + strand, within SGL_RS18165at 3528.671 kb on + strand, within SGL_RS18165at 3528.719 kb on - strand, within SGL_RS18165at 3528.820 kb on + strand, within SGL_RS18165at 3528.823 kb on - strand, within SGL_RS18165at 3528.885 kb on + strand, within SGL_RS18165at 3528.970 kb on - strand, within SGL_RS18165at 3529.046 kb on - strand, within SGL_RS18165at 3529.055 kb on + strand, within SGL_RS18165at 3529.062 kb on + strand, within SGL_RS18165at 3529.065 kb on - strand, within SGL_RS18165at 3529.074 kb on + strand, within SGL_RS18165at 3529.283 kb on + strandat 3529.291 kb on - strandat 3529.297 kb on + strandat 3529.313 kb on - strandat 3529.458 kb on + strand, within SGL_RS18170at 3529.634 kb on + strand, within SGL_RS18170at 3529.664 kb on + strand, within SGL_RS18170at 3530.136 kb on + strand, within SGL_RS18175at 3530.361 kb on + strand, within SGL_RS18175at 3530.384 kb on + strand, within SGL_RS18175at 3530.400 kb on + strand, within SGL_RS18175at 3530.452 kb on - strand, within SGL_RS18175at 3530.493 kb on - strand, within SGL_RS18175at 3530.622 kb on - strand, within SGL_RS18175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
3,528,356 + +0.4
3,528,368 + +0.4
3,528,376 - SGL_RS18165 0.11 +0.7
3,528,398 + SGL_RS18165 0.13 +0.3
3,528,398 + SGL_RS18165 0.13 +0.2
3,528,499 + SGL_RS18165 0.22 +0.2
3,528,671 + SGL_RS18165 0.39 -0.2
3,528,671 + SGL_RS18165 0.39 +0.1
3,528,719 - SGL_RS18165 0.44 +0.4
3,528,820 + SGL_RS18165 0.53 -0.1
3,528,823 - SGL_RS18165 0.54 +0.5
3,528,885 + SGL_RS18165 0.60 -0.0
3,528,970 - SGL_RS18165 0.68 +0.2
3,529,046 - SGL_RS18165 0.75 -0.6
3,529,055 + SGL_RS18165 0.76 -0.2
3,529,062 + SGL_RS18165 0.77 -0.2
3,529,065 - SGL_RS18165 0.77 +0.2
3,529,074 + SGL_RS18165 0.78 -0.1
3,529,283 + -0.3
3,529,291 - -1.7
3,529,297 + -1.4
3,529,313 - -0.5
3,529,458 + SGL_RS18170 0.20 -3.2
3,529,634 + SGL_RS18170 0.46 -2.4
3,529,664 + SGL_RS18170 0.51 -1.6
3,530,136 + SGL_RS18175 0.11 -0.1
3,530,361 + SGL_RS18175 0.35 -0.4
3,530,384 + SGL_RS18175 0.38 -1.3
3,530,400 + SGL_RS18175 0.39 +0.1
3,530,452 - SGL_RS18175 0.45 +0.3
3,530,493 - SGL_RS18175 0.49 +1.1
3,530,622 - SGL_RS18175 0.63 +0.4

Or see this region's nucleotide sequence