Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17715

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17705 and SGL_RS17710 overlap by 8 nucleotidesSGL_RS17710 and SGL_RS17715 are separated by 552 nucleotidesSGL_RS17715 and SGL_RS17720 are separated by 369 nucleotidesSGL_RS17720 and SGL_RS17725 are separated by 21 nucleotides SGL_RS17705: SGL_RS17705 - type II toxin-antitoxin system HicA family toxin, at 3,426,774 to 3,427,001 _RS17705 SGL_RS17710: SGL_RS17710 - type II toxin-antitoxin system HicB family antitoxin, at 3,426,994 to 3,427,203 _RS17710 SGL_RS17715: SGL_RS17715 - DUF4327 family protein, at 3,427,756 to 3,428,013 _RS17715 SGL_RS17720: SGL_RS17720 - NYN domain-containing protein, at 3,428,383 to 3,428,940 _RS17720 SGL_RS17725: SGL_RS17725 - type II toxin-antitoxin system HicB family antitoxin, at 3,428,962 to 3,429,171 _RS17725 Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -2 -1 0 1at 3427.006 kb on - strandat 3427.278 kb on + strandat 3427.278 kb on + strandat 3427.302 kb on + strandat 3427.310 kb on - strandat 3427.343 kb on + strandat 3427.367 kb on + strandat 3427.430 kb on - strandat 3427.444 kb on + strandat 3427.686 kb on + strandat 3427.705 kb on + strandat 3427.742 kb on - strandat 3427.742 kb on - strandat 3427.751 kb on + strandat 3427.858 kb on + strand, within SGL_RS17715at 3427.865 kb on + strand, within SGL_RS17715at 3428.061 kb on + strandat 3428.061 kb on + strandat 3428.061 kb on + strandat 3428.075 kb on + strandat 3428.088 kb on - strandat 3428.088 kb on - strandat 3428.133 kb on + strandat 3428.151 kb on + strandat 3428.182 kb on + strandat 3428.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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3,427,006 - +0.2
3,427,278 + +0.1
3,427,278 + -0.1
3,427,302 + +0.6
3,427,310 - +0.0
3,427,343 + +0.1
3,427,367 + -0.4
3,427,430 - -2.0
3,427,444 + +0.1
3,427,686 + +0.3
3,427,705 + +0.1
3,427,742 - +0.2
3,427,742 - +0.0
3,427,751 + +0.1
3,427,858 + SGL_RS17715 0.40 -1.5
3,427,865 + SGL_RS17715 0.42 -1.0
3,428,061 + +0.1
3,428,061 + +0.7
3,428,061 + -0.3
3,428,075 + -0.0
3,428,088 - +0.2
3,428,088 - +0.2
3,428,133 + +0.1
3,428,151 + +0.1
3,428,182 + +0.2
3,428,894 - -2.0

Or see this region's nucleotide sequence