Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17175

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17170 and SGL_RS17175 are separated by 191 nucleotidesSGL_RS17175 and SGL_RS17180 are separated by 272 nucleotides SGL_RS17170: SGL_RS17170 - chromate transporter, at 3,303,481 to 3,304,680 _RS17170 SGL_RS17175: SGL_RS17175 - allophycocyanin subunit beta, at 3,304,872 to 3,305,381 _RS17175 SGL_RS17180: SGL_RS17180 - DEAD/DEAH box helicase, at 3,305,654 to 3,308,773 _RS17180 Position (kb) 3304 3305 3306Strain fitness (log2 ratio) -2 -1 0 1at 3303.984 kb on + strand, within SGL_RS17170at 3304.008 kb on - strand, within SGL_RS17170at 3304.105 kb on + strand, within SGL_RS17170at 3304.210 kb on + strand, within SGL_RS17170at 3304.318 kb on - strand, within SGL_RS17170at 3304.345 kb on - strand, within SGL_RS17170at 3304.437 kb on + strand, within SGL_RS17170at 3304.437 kb on + strand, within SGL_RS17170at 3304.445 kb on - strand, within SGL_RS17170at 3304.492 kb on - strand, within SGL_RS17170at 3304.503 kb on + strand, within SGL_RS17170at 3304.536 kb on - strand, within SGL_RS17170at 3304.554 kb on + strand, within SGL_RS17170at 3304.563 kb on - strandat 3304.665 kb on - strandat 3304.744 kb on - strandat 3304.772 kb on + strandat 3304.772 kb on + strandat 3304.984 kb on - strand, within SGL_RS17175at 3305.165 kb on - strand, within SGL_RS17175at 3305.307 kb on + strand, within SGL_RS17175at 3305.361 kb on - strandat 3305.554 kb on - strandat 3305.724 kb on + strandat 3305.943 kb on + strandat 3306.049 kb on + strand, within SGL_RS17180at 3306.057 kb on - strand, within SGL_RS17180at 3306.292 kb on - strand, within SGL_RS17180

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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3,303,984 + SGL_RS17170 0.42 -0.0
3,304,008 - SGL_RS17170 0.44 +0.0
3,304,105 + SGL_RS17170 0.52 -0.1
3,304,210 + SGL_RS17170 0.61 +0.0
3,304,318 - SGL_RS17170 0.70 -0.1
3,304,345 - SGL_RS17170 0.72 +0.0
3,304,437 + SGL_RS17170 0.80 +0.3
3,304,437 + SGL_RS17170 0.80 +0.0
3,304,445 - SGL_RS17170 0.80 -0.1
3,304,492 - SGL_RS17170 0.84 -0.4
3,304,503 + SGL_RS17170 0.85 +0.1
3,304,536 - SGL_RS17170 0.88 +0.1
3,304,554 + SGL_RS17170 0.89 +0.5
3,304,563 - +0.3
3,304,665 - -0.2
3,304,744 - +0.3
3,304,772 + -1.6
3,304,772 + -0.2
3,304,984 - SGL_RS17175 0.22 -1.1
3,305,165 - SGL_RS17175 0.57 -2.4
3,305,307 + SGL_RS17175 0.85 -1.1
3,305,361 - -2.2
3,305,554 - +0.3
3,305,724 + -0.4
3,305,943 + -0.1
3,306,049 + SGL_RS17180 0.13 -0.6
3,306,057 - SGL_RS17180 0.13 -0.4
3,306,292 - SGL_RS17180 0.20 +0.9

Or see this region's nucleotide sequence