Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15655

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15645 and SGL_RS15650 are separated by 363 nucleotidesSGL_RS15650 and SGL_RS15655 are separated by 175 nucleotidesSGL_RS15655 and SGL_RS15660 are separated by 58 nucleotidesSGL_RS15660 and SGL_RS15665 are separated by 169 nucleotides SGL_RS15645: SGL_RS15645 - NAD(P)/FAD-dependent oxidoreductase, at 2,959,530 to 2,960,756 _RS15645 SGL_RS15650: SGL_RS15650 - thioredoxin, at 2,961,120 to 2,961,443 _RS15650 SGL_RS15655: SGL_RS15655 - asparaginase, at 2,961,619 to 2,962,647 _RS15655 SGL_RS15660: SGL_RS15660 - CGLD27 family protein, at 2,962,706 to 2,963,227 _RS15660 SGL_RS15665: SGL_RS15665 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 2,963,397 to 2,964,512 _RS15665 Position (kb) 2961 2962 2963Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2960.630 kb on + strand, within SGL_RS15645at 2960.768 kb on + strandat 2960.768 kb on + strandat 2960.768 kb on + strandat 2960.884 kb on - strandat 2961.376 kb on - strand, within SGL_RS15650at 2961.481 kb on + strandat 2961.617 kb on + strandat 2961.735 kb on + strand, within SGL_RS15655at 2961.742 kb on + strand, within SGL_RS15655at 2961.793 kb on + strand, within SGL_RS15655at 2961.801 kb on - strand, within SGL_RS15655at 2961.801 kb on - strand, within SGL_RS15655at 2961.801 kb on - strand, within SGL_RS15655at 2961.801 kb on - strand, within SGL_RS15655at 2961.811 kb on - strand, within SGL_RS15655at 2961.926 kb on + strand, within SGL_RS15655at 2961.934 kb on - strand, within SGL_RS15655at 2962.013 kb on + strand, within SGL_RS15655at 2962.053 kb on + strand, within SGL_RS15655at 2962.112 kb on + strand, within SGL_RS15655at 2962.152 kb on + strand, within SGL_RS15655at 2962.311 kb on + strand, within SGL_RS15655at 2962.316 kb on + strand, within SGL_RS15655at 2962.338 kb on - strand, within SGL_RS15655at 2962.417 kb on + strand, within SGL_RS15655at 2962.449 kb on + strand, within SGL_RS15655at 2962.495 kb on + strand, within SGL_RS15655at 2962.549 kb on - strandat 2962.707 kb on - strandat 2962.768 kb on - strand, within SGL_RS15660at 2962.921 kb on + strand, within SGL_RS15660at 2962.934 kb on - strand, within SGL_RS15660at 2963.075 kb on + strand, within SGL_RS15660at 2963.075 kb on + strand, within SGL_RS15660at 2963.082 kb on - strand, within SGL_RS15660at 2963.089 kb on + strand, within SGL_RS15660at 2963.118 kb on - strand, within SGL_RS15660at 2963.190 kb on + strandat 2963.198 kb on - strandat 2963.203 kb on - strandat 2963.257 kb on + strandat 2963.303 kb on - strandat 2963.369 kb on + strandat 2963.393 kb on + strandat 2963.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,960,630 + SGL_RS15645 0.90 -0.1
2,960,768 + +2.8
2,960,768 + -0.8
2,960,768 + +0.1
2,960,884 - -0.0
2,961,376 - SGL_RS15650 0.79 -1.7
2,961,481 + +0.1
2,961,617 + -0.1
2,961,735 + SGL_RS15655 0.11 -4.0
2,961,742 + SGL_RS15655 0.12 -3.3
2,961,793 + SGL_RS15655 0.17 -3.3
2,961,801 - SGL_RS15655 0.18 -3.9
2,961,801 - SGL_RS15655 0.18 -1.3
2,961,801 - SGL_RS15655 0.18 -5.5
2,961,801 - SGL_RS15655 0.18 -5.1
2,961,811 - SGL_RS15655 0.19 -5.2
2,961,926 + SGL_RS15655 0.30 -2.9
2,961,934 - SGL_RS15655 0.31 -3.6
2,962,013 + SGL_RS15655 0.38 -4.8
2,962,053 + SGL_RS15655 0.42 -4.6
2,962,112 + SGL_RS15655 0.48 -3.7
2,962,152 + SGL_RS15655 0.52 -4.0
2,962,311 + SGL_RS15655 0.67 -3.1
2,962,316 + SGL_RS15655 0.68 -3.4
2,962,338 - SGL_RS15655 0.70 -4.0
2,962,417 + SGL_RS15655 0.78 -4.2
2,962,449 + SGL_RS15655 0.81 -4.2
2,962,495 + SGL_RS15655 0.85 -3.9
2,962,549 - +0.2
2,962,707 - -0.2
2,962,768 - SGL_RS15660 0.12 +0.2
2,962,921 + SGL_RS15660 0.41 +0.3
2,962,934 - SGL_RS15660 0.44 -0.5
2,963,075 + SGL_RS15660 0.71 -0.7
2,963,075 + SGL_RS15660 0.71 +0.2
2,963,082 - SGL_RS15660 0.72 +0.1
2,963,089 + SGL_RS15660 0.73 +0.2
2,963,118 - SGL_RS15660 0.79 -0.2
2,963,190 + +0.5
2,963,198 - -0.3
2,963,203 - +0.3
2,963,257 + -0.1
2,963,303 - +0.2
2,963,369 + +0.5
2,963,393 + -0.4
2,963,401 - -0.3

Or see this region's nucleotide sequence