Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14190

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14180 and SGL_RS14185 are separated by 114 nucleotidesSGL_RS14185 and SGL_RS14190 are separated by 25 nucleotidesSGL_RS14190 and SGL_RS14195 are separated by 185 nucleotides SGL_RS14180: SGL_RS14180 - phosphate ABC transporter ATP-binding protein PstB, at 2,636,828 to 2,637,628 _RS14180 SGL_RS14185: SGL_RS14185 - phosphate ABC transporter ATP-binding protein PstB, at 2,637,743 to 2,638,552 _RS14185 SGL_RS14190: SGL_RS14190 - phosphate ABC transporter permease PstA, at 2,638,578 to 2,639,441 _RS14190 SGL_RS14195: SGL_RS14195 - phosphate ABC transporter permease subunit PstC, at 2,639,627 to 2,640,580 _RS14195 Position (kb) 2638 2639 2640Strain fitness (log2 ratio) -2 -1 0 1at 2637.632 kb on - strandat 2637.706 kb on - strandat 2637.976 kb on + strand, within SGL_RS14185at 2637.989 kb on + strand, within SGL_RS14185at 2638.077 kb on - strand, within SGL_RS14185at 2638.204 kb on - strand, within SGL_RS14185at 2638.306 kb on - strand, within SGL_RS14185at 2638.316 kb on + strand, within SGL_RS14185at 2638.665 kb on - strand, within SGL_RS14190at 2638.764 kb on + strand, within SGL_RS14190at 2638.830 kb on + strand, within SGL_RS14190at 2638.884 kb on - strand, within SGL_RS14190at 2638.892 kb on + strand, within SGL_RS14190at 2638.907 kb on - strand, within SGL_RS14190at 2638.935 kb on + strand, within SGL_RS14190at 2638.966 kb on - strand, within SGL_RS14190at 2638.988 kb on + strand, within SGL_RS14190at 2639.155 kb on - strand, within SGL_RS14190at 2639.285 kb on + strand, within SGL_RS14190at 2639.367 kb on - strandat 2639.377 kb on + strandat 2639.405 kb on + strandat 2639.426 kb on + strandat 2639.484 kb on + strandat 2639.698 kb on + strandat 2639.714 kb on + strandat 2639.883 kb on - strand, within SGL_RS14195at 2640.084 kb on + strand, within SGL_RS14195at 2640.188 kb on + strand, within SGL_RS14195at 2640.434 kb on + strand, within SGL_RS14195

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,637,632 - -2.6
2,637,706 - -0.0
2,637,976 + SGL_RS14185 0.29 -1.3
2,637,989 + SGL_RS14185 0.30 -0.9
2,638,077 - SGL_RS14185 0.41 -0.4
2,638,204 - SGL_RS14185 0.57 -1.7
2,638,306 - SGL_RS14185 0.70 -0.9
2,638,316 + SGL_RS14185 0.71 -1.7
2,638,665 - SGL_RS14190 0.10 -1.9
2,638,764 + SGL_RS14190 0.22 -1.7
2,638,830 + SGL_RS14190 0.29 -0.7
2,638,884 - SGL_RS14190 0.35 -0.5
2,638,892 + SGL_RS14190 0.36 -0.9
2,638,907 - SGL_RS14190 0.38 -1.3
2,638,935 + SGL_RS14190 0.41 -1.6
2,638,966 - SGL_RS14190 0.45 -1.5
2,638,988 + SGL_RS14190 0.47 -1.4
2,639,155 - SGL_RS14190 0.67 -0.5
2,639,285 + SGL_RS14190 0.82 -0.9
2,639,367 - -1.4
2,639,377 + -1.3
2,639,405 + -1.8
2,639,426 + -1.5
2,639,484 + -0.3
2,639,698 + -1.3
2,639,714 + -0.1
2,639,883 - SGL_RS14195 0.27 -1.4
2,640,084 + SGL_RS14195 0.48 -2.7
2,640,188 + SGL_RS14195 0.59 -0.9
2,640,434 + SGL_RS14195 0.85 -1.3

Or see this region's nucleotide sequence