Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13555

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13550 and SGL_RS13555 are separated by 218 nucleotidesSGL_RS13555 and SGL_RS13560 are separated by 257 nucleotides SGL_RS13550: SGL_RS13550 - long-chain acyl-[acyl-carrier-protein] reductase, at 2,510,273 to 2,511,295 _RS13550 SGL_RS13555: SGL_RS13555 - aldehyde oxygenase (deformylating), at 2,511,514 to 2,512,209 _RS13555 SGL_RS13560: SGL_RS13560 - glucose-1-phosphate thymidylyltransferase, at 2,512,467 to 2,513,564 _RS13560 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -2 -1 0 1at 2510.662 kb on - strand, within SGL_RS13550at 2511.038 kb on + strand, within SGL_RS13550at 2511.230 kb on + strandat 2511.238 kb on - strandat 2511.358 kb on + strandat 2511.366 kb on - strandat 2511.405 kb on + strandat 2511.429 kb on + strandat 2511.652 kb on + strand, within SGL_RS13555at 2511.788 kb on + strand, within SGL_RS13555at 2512.136 kb on - strand, within SGL_RS13555at 2512.232 kb on - strandat 2512.377 kb on - strandat 2512.396 kb on - strandat 2512.404 kb on + strandat 2512.407 kb on - strandat 2512.457 kb on - strandat 2512.478 kb on - strandat 2512.494 kb on + strandat 2512.673 kb on - strand, within SGL_RS13560at 2512.687 kb on - strand, within SGL_RS13560at 2512.752 kb on + strand, within SGL_RS13560at 2512.761 kb on + strand, within SGL_RS13560at 2512.817 kb on + strand, within SGL_RS13560at 2512.950 kb on + strand, within SGL_RS13560at 2512.951 kb on - strand, within SGL_RS13560at 2513.008 kb on + strand, within SGL_RS13560at 2513.025 kb on + strand, within SGL_RS13560at 2513.108 kb on - strand, within SGL_RS13560at 2513.108 kb on - strand, within SGL_RS13560

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,510,662 - SGL_RS13550 0.38 -2.5
2,511,038 + SGL_RS13550 0.75 -0.1
2,511,230 + -1.6
2,511,238 - -1.1
2,511,358 + -1.2
2,511,366 - -1.2
2,511,405 + -0.0
2,511,429 + -0.2
2,511,652 + SGL_RS13555 0.20 -1.4
2,511,788 + SGL_RS13555 0.39 -0.9
2,512,136 - SGL_RS13555 0.89 -1.7
2,512,232 - -2.0
2,512,377 - +0.6
2,512,396 - +0.1
2,512,404 + +0.9
2,512,407 - +0.2
2,512,457 - +0.3
2,512,478 - +0.2
2,512,494 + +0.6
2,512,673 - SGL_RS13560 0.19 +0.3
2,512,687 - SGL_RS13560 0.20 +0.6
2,512,752 + SGL_RS13560 0.26 +0.2
2,512,761 + SGL_RS13560 0.27 +0.5
2,512,817 + SGL_RS13560 0.32 -0.3
2,512,950 + SGL_RS13560 0.44 +0.5
2,512,951 - SGL_RS13560 0.44 -0.4
2,513,008 + SGL_RS13560 0.49 -0.3
2,513,025 + SGL_RS13560 0.51 +0.4
2,513,108 - SGL_RS13560 0.58 +0.2
2,513,108 - SGL_RS13560 0.58 +0.2

Or see this region's nucleotide sequence