Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11495

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11485 and SGL_RS11490 are separated by 263 nucleotidesSGL_RS11490 and SGL_RS11495 are separated by 41 nucleotidesSGL_RS11495 and SGL_RS11500 are separated by 60 nucleotides SGL_RS11485: SGL_RS11485 - inorganic diphosphatase, at 2,034,294 to 2,034,803 _RS11485 SGL_RS11490: SGL_RS11490 - NAD(P)H-quinone oxidoreductase subunit M, at 2,035,067 to 2,035,432 _RS11490 SGL_RS11495: SGL_RS11495 - Ig-like domain-containing protein, at 2,035,474 to 2,036,850 _RS11495 SGL_RS11500: SGL_RS11500 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,036,911 to 2,038,527 _RS11500 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2034.772 kb on + strandat 2034.819 kb on + strandat 2034.905 kb on - strandat 2035.464 kb on + strandat 2035.464 kb on + strandat 2035.472 kb on - strandat 2035.472 kb on - strandat 2035.472 kb on - strandat 2035.474 kb on + strandat 2035.530 kb on + strandat 2035.538 kb on - strandat 2035.543 kb on - strandat 2035.547 kb on + strandat 2035.687 kb on + strand, within SGL_RS11495at 2035.708 kb on - strand, within SGL_RS11495at 2035.884 kb on - strand, within SGL_RS11495at 2036.052 kb on + strand, within SGL_RS11495at 2036.619 kb on + strand, within SGL_RS11495at 2036.671 kb on - strand, within SGL_RS11495at 2036.767 kb on - strandat 2036.804 kb on + strandat 2036.804 kb on + strandat 2037.138 kb on + strand, within SGL_RS11500at 2037.266 kb on + strand, within SGL_RS11500at 2037.283 kb on - strand, within SGL_RS11500at 2037.297 kb on - strand, within SGL_RS11500at 2037.483 kb on - strand, within SGL_RS11500at 2037.596 kb on + strand, within SGL_RS11500at 2037.829 kb on + strand, within SGL_RS11500

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,034,772 + +0.3
2,034,819 + -0.1
2,034,905 - -0.2
2,035,464 + -3.8
2,035,464 + -5.0
2,035,472 - -4.0
2,035,472 - -5.4
2,035,472 - -4.7
2,035,474 + -3.7
2,035,530 + -4.3
2,035,538 - -3.2
2,035,543 - -2.4
2,035,547 + -4.4
2,035,687 + SGL_RS11495 0.15 -2.4
2,035,708 - SGL_RS11495 0.17 -5.5
2,035,884 - SGL_RS11495 0.30 -3.4
2,036,052 + SGL_RS11495 0.42 -4.0
2,036,619 + SGL_RS11495 0.83 +0.2
2,036,671 - SGL_RS11495 0.87 -0.0
2,036,767 - +0.4
2,036,804 + -0.2
2,036,804 + -0.5
2,037,138 + SGL_RS11500 0.14 -0.5
2,037,266 + SGL_RS11500 0.22 +0.4
2,037,283 - SGL_RS11500 0.23 +0.3
2,037,297 - SGL_RS11500 0.24 +0.1
2,037,483 - SGL_RS11500 0.35 +0.0
2,037,596 + SGL_RS11500 0.42 +0.1
2,037,829 + SGL_RS11500 0.57 -0.1

Or see this region's nucleotide sequence