Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10305

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10295 and SGL_RS10300 are separated by 86 nucleotidesSGL_RS10300 and SGL_RS10305 are separated by 182 nucleotidesSGL_RS10305 and SGL_RS10310 are separated by 59 nucleotidesSGL_RS10310 and SGL_RS10315 are separated by 274 nucleotides SGL_RS10295: SGL_RS10295 - GAF domain-containing protein, at 1,782,057 to 1,783,355 _RS10295 SGL_RS10300: SGL_RS10300 - hypothetical protein, at 1,783,442 to 1,783,672 _RS10300 SGL_RS10305: SGL_RS10305 - PIN/TRAM domain-containing protein, at 1,783,855 to 1,784,934 _RS10305 SGL_RS10310: SGL_RS10310 - hypothetical protein, at 1,784,994 to 1,785,560 _RS10310 SGL_RS10315: SGL_RS10315 - hypothetical protein, at 1,785,835 to 1,788,357 _RS10315 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1782.967 kb on - strand, within SGL_RS10295at 1782.987 kb on + strand, within SGL_RS10295at 1783.008 kb on - strand, within SGL_RS10295at 1783.193 kb on + strand, within SGL_RS10295at 1783.364 kb on + strandat 1783.377 kb on + strandat 1783.574 kb on + strand, within SGL_RS10300at 1783.910 kb on - strandat 1784.226 kb on + strand, within SGL_RS10305at 1784.249 kb on + strand, within SGL_RS10305at 1784.318 kb on + strand, within SGL_RS10305at 1784.383 kb on + strand, within SGL_RS10305at 1784.383 kb on + strand, within SGL_RS10305at 1784.472 kb on + strand, within SGL_RS10305at 1784.558 kb on - strand, within SGL_RS10305at 1784.708 kb on - strand, within SGL_RS10305at 1784.991 kb on + strandat 1784.991 kb on + strandat 1785.162 kb on - strand, within SGL_RS10310at 1785.291 kb on + strand, within SGL_RS10310at 1785.319 kb on - strand, within SGL_RS10310at 1785.356 kb on - strand, within SGL_RS10310at 1785.671 kb on + strandat 1785.679 kb on - strandat 1785.726 kb on - strandat 1785.763 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
1,782,967 - SGL_RS10295 0.70 +0.3
1,782,987 + SGL_RS10295 0.72 -0.4
1,783,008 - SGL_RS10295 0.73 -0.4
1,783,193 + SGL_RS10295 0.87 +0.1
1,783,364 + -0.1
1,783,377 + +0.1
1,783,574 + SGL_RS10300 0.57 -0.5
1,783,910 - -2.3
1,784,226 + SGL_RS10305 0.34 -3.1
1,784,249 + SGL_RS10305 0.36 -4.7
1,784,318 + SGL_RS10305 0.43 -4.2
1,784,383 + SGL_RS10305 0.49 -1.8
1,784,383 + SGL_RS10305 0.49 -3.2
1,784,472 + SGL_RS10305 0.57 -5.8
1,784,558 - SGL_RS10305 0.65 -3.7
1,784,708 - SGL_RS10305 0.79 -2.2
1,784,991 + +0.2
1,784,991 + +0.1
1,785,162 - SGL_RS10310 0.30 +0.2
1,785,291 + SGL_RS10310 0.52 -0.2
1,785,319 - SGL_RS10310 0.57 -0.3
1,785,356 - SGL_RS10310 0.64 +0.6
1,785,671 + -0.3
1,785,679 - +0.2
1,785,726 - +0.1
1,785,763 + -0.3

Or see this region's nucleotide sequence