Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09720

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09715 and SGL_RS09720 are separated by 7 nucleotidesSGL_RS09720 and SGL_RS09725 are separated by 206 nucleotides SGL_RS09715: SGL_RS09715 - pitrilysin family protein, at 1,669,125 to 1,670,642 _RS09715 SGL_RS09720: SGL_RS09720 - beta-ketoacyl-ACP synthase, at 1,670,650 to 1,671,864 _RS09720 SGL_RS09725: SGL_RS09725 - Ni/Fe hydrogenase subunit alpha, at 1,672,071 to 1,673,495 _RS09725 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1669.783 kb on + strand, within SGL_RS09715at 1669.808 kb on - strand, within SGL_RS09715at 1669.875 kb on - strand, within SGL_RS09715at 1669.889 kb on - strand, within SGL_RS09715at 1669.956 kb on + strand, within SGL_RS09715at 1670.079 kb on + strand, within SGL_RS09715at 1670.097 kb on - strand, within SGL_RS09715at 1670.098 kb on + strand, within SGL_RS09715at 1670.189 kb on - strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.219 kb on - strand, within SGL_RS09715at 1670.219 kb on - strand, within SGL_RS09715at 1670.305 kb on + strand, within SGL_RS09715at 1670.342 kb on - strand, within SGL_RS09715at 1670.586 kb on + strandat 1670.587 kb on + strandat 1670.688 kb on + strandat 1670.722 kb on + strandat 1670.725 kb on - strandat 1670.730 kb on - strandat 1670.884 kb on + strand, within SGL_RS09720at 1670.956 kb on - strand, within SGL_RS09720at 1671.004 kb on - strand, within SGL_RS09720at 1671.084 kb on - strand, within SGL_RS09720at 1671.134 kb on + strand, within SGL_RS09720at 1671.142 kb on - strand, within SGL_RS09720at 1671.170 kb on + strand, within SGL_RS09720at 1671.310 kb on - strand, within SGL_RS09720at 1671.530 kb on + strand, within SGL_RS09720at 1671.626 kb on + strand, within SGL_RS09720at 1671.626 kb on + strand, within SGL_RS09720at 1671.634 kb on - strand, within SGL_RS09720at 1671.634 kb on - strand, within SGL_RS09720at 1671.800 kb on + strandat 1671.923 kb on + strandat 1672.017 kb on + strandat 1672.019 kb on - strandat 1672.087 kb on + strandat 1672.160 kb on + strandat 1672.390 kb on - strand, within SGL_RS09725at 1672.655 kb on - strand, within SGL_RS09725

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,669,783 + SGL_RS09715 0.43 -0.4
1,669,808 - SGL_RS09715 0.45 -1.3
1,669,875 - SGL_RS09715 0.49 -0.7
1,669,889 - SGL_RS09715 0.50 -0.1
1,669,956 + SGL_RS09715 0.55 -1.1
1,670,079 + SGL_RS09715 0.63 -1.0
1,670,097 - SGL_RS09715 0.64 -2.5
1,670,098 + SGL_RS09715 0.64 -0.7
1,670,189 - SGL_RS09715 0.70 -0.5
1,670,211 + SGL_RS09715 0.72 +0.3
1,670,211 + SGL_RS09715 0.72 +0.5
1,670,211 + SGL_RS09715 0.72 -0.7
1,670,211 + SGL_RS09715 0.72 -1.2
1,670,219 - SGL_RS09715 0.72 -1.9
1,670,219 - SGL_RS09715 0.72 -0.6
1,670,305 + SGL_RS09715 0.78 -0.8
1,670,342 - SGL_RS09715 0.80 -0.6
1,670,586 + -0.7
1,670,587 + +0.1
1,670,688 + +0.3
1,670,722 + -3.2
1,670,725 - -3.4
1,670,730 - -3.7
1,670,884 + SGL_RS09720 0.19 -2.2
1,670,956 - SGL_RS09720 0.25 -2.1
1,671,004 - SGL_RS09720 0.29 -1.2
1,671,084 - SGL_RS09720 0.36 -0.6
1,671,134 + SGL_RS09720 0.40 -2.7
1,671,142 - SGL_RS09720 0.40 -1.1
1,671,170 + SGL_RS09720 0.43 -2.8
1,671,310 - SGL_RS09720 0.54 -3.9
1,671,530 + SGL_RS09720 0.72 -1.2
1,671,626 + SGL_RS09720 0.80 -2.5
1,671,626 + SGL_RS09720 0.80 -1.8
1,671,634 - SGL_RS09720 0.81 -3.7
1,671,634 - SGL_RS09720 0.81 -3.0
1,671,800 + -3.4
1,671,923 + +0.1
1,672,017 + -0.1
1,672,019 - -0.1
1,672,087 + +0.7
1,672,160 + +0.1
1,672,390 - SGL_RS09725 0.22 +0.0
1,672,655 - SGL_RS09725 0.41 -0.1

Or see this region's nucleotide sequence