Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08490 and SGL_RS08495 are separated by 195 nucleotides SGL_RS08495 and SGL_RS08500 are separated by 27 nucleotides
SGL_RS08490: SGL_RS08490 - sulfite exporter TauE/SafE family protein, at 1,405,981 to 1,406,847
_RS08490
SGL_RS08495: SGL_RS08495 - DUF3370 domain-containing protein, at 1,407,043 to 1,408,455
_RS08495
SGL_RS08500: SGL_RS08500 - GntR family transcriptional regulator, at 1,408,483 to 1,409,649
_RS08500
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1406.186 kb on - strand, within SGL_RS08490 at 1406.201 kb on - strand, within SGL_RS08490 at 1406.243 kb on + strand, within SGL_RS08490 at 1406.252 kb on - strand, within SGL_RS08490 at 1406.363 kb on + strand, within SGL_RS08490 at 1406.388 kb on + strand, within SGL_RS08490 at 1406.433 kb on + strand, within SGL_RS08490 at 1406.441 kb on + strand, within SGL_RS08490 at 1406.469 kb on + strand, within SGL_RS08490 at 1406.568 kb on + strand, within SGL_RS08490 at 1406.827 kb on - strand at 1406.907 kb on + strand at 1407.141 kb on + strand at 1407.183 kb on + strand at 1407.283 kb on + strand, within SGL_RS08495 at 1407.291 kb on - strand, within SGL_RS08495 at 1407.337 kb on + strand, within SGL_RS08495 at 1407.360 kb on + strand, within SGL_RS08495 at 1407.386 kb on + strand, within SGL_RS08495 at 1407.536 kb on + strand, within SGL_RS08495 at 1407.761 kb on + strand, within SGL_RS08495 at 1407.765 kb on - strand, within SGL_RS08495 at 1407.774 kb on + strand, within SGL_RS08495 at 1407.874 kb on + strand, within SGL_RS08495 at 1408.023 kb on + strand, within SGL_RS08495 at 1408.042 kb on - strand, within SGL_RS08495 at 1408.070 kb on - strand, within SGL_RS08495 at 1408.076 kb on - strand, within SGL_RS08495 at 1408.269 kb on + strand, within SGL_RS08495 at 1408.277 kb on - strand, within SGL_RS08495 at 1408.355 kb on + strand at 1408.377 kb on + strand at 1408.385 kb on - strand at 1408.395 kb on - strand at 1408.395 kb on - strand at 1408.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,406,186 - SGL_RS08490 0.24 -0.2 1,406,201 - SGL_RS08490 0.25 -0.0 1,406,243 + SGL_RS08490 0.30 +0.6 1,406,252 - SGL_RS08490 0.31 -0.5 1,406,363 + SGL_RS08490 0.44 -0.4 1,406,388 + SGL_RS08490 0.47 +0.2 1,406,433 + SGL_RS08490 0.52 +0.2 1,406,441 + SGL_RS08490 0.53 +0.1 1,406,469 + SGL_RS08490 0.56 +0.0 1,406,568 + SGL_RS08490 0.68 -0.0 1,406,827 - -0.5 1,406,907 + +0.3 1,407,141 + -3.3 1,407,183 + -3.7 1,407,283 + SGL_RS08495 0.17 -4.7 1,407,291 - SGL_RS08495 0.18 -3.4 1,407,337 + SGL_RS08495 0.21 -6.0 1,407,360 + SGL_RS08495 0.22 -4.0 1,407,386 + SGL_RS08495 0.24 -1.8 1,407,536 + SGL_RS08495 0.35 -2.2 1,407,761 + SGL_RS08495 0.51 -5.0 1,407,765 - SGL_RS08495 0.51 -4.4 1,407,774 + SGL_RS08495 0.52 -3.6 1,407,874 + SGL_RS08495 0.59 -4.9 1,408,023 + SGL_RS08495 0.69 -4.1 1,408,042 - SGL_RS08495 0.71 -4.5 1,408,070 - SGL_RS08495 0.73 -4.1 1,408,076 - SGL_RS08495 0.73 -3.5 1,408,269 + SGL_RS08495 0.87 -5.5 1,408,277 - SGL_RS08495 0.87 -5.5 1,408,355 + -4.9 1,408,377 + -4.0 1,408,385 - -3.5 1,408,395 - -4.9 1,408,395 - -1.0 1,408,481 + +0.2
Or see this region's nucleotide sequence