Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05235

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05225 and SGL_RS05230 are separated by 231 nucleotidesSGL_RS05230 and SGL_RS05235 are separated by 146 nucleotidesSGL_RS05235 and SGL_RS05240 are separated by 45 nucleotidesSGL_RS05240 and SGL_RS05245 are separated by 114 nucleotides SGL_RS05225: SGL_RS05225 - serine--tRNA ligase, at 722,570 to 723,862 _RS05225 SGL_RS05230: SGL_RS05230 - phycobilisome linker polypeptide, at 724,094 to 724,345 _RS05230 SGL_RS05235: SGL_RS05235 - phycobilisome linker polypeptide, at 724,492 to 725,367 _RS05235 SGL_RS05240: SGL_RS05240 - phycobilisome linker polypeptide, at 725,413 to 726,234 _RS05240 SGL_RS05245: SGL_RS05245 - phycocyanin subunit alpha, at 726,349 to 726,837 _RS05245 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1at 724.531 kb on - strandat 724.563 kb on - strandat 724.713 kb on - strand, within SGL_RS05235at 724.799 kb on + strand, within SGL_RS05235at 724.950 kb on - strand, within SGL_RS05235at 725.233 kb on + strand, within SGL_RS05235at 725.554 kb on - strand, within SGL_RS05240at 726.100 kb on + strand, within SGL_RS05240at 726.190 kb on - strandat 726.200 kb on - strandat 726.321 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
724,531 - -2.1
724,563 - -1.6
724,713 - SGL_RS05235 0.25 -2.1
724,799 + SGL_RS05235 0.35 -1.0
724,950 - SGL_RS05235 0.52 -1.6
725,233 + SGL_RS05235 0.85 -2.7
725,554 - SGL_RS05240 0.17 -1.3
726,100 + SGL_RS05240 0.84 -0.8
726,190 - -3.2
726,200 - -1.6
726,321 + -2.5

Or see this region's nucleotide sequence