Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03970

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03965 and SGL_RS03970 overlap by 21 nucleotidesSGL_RS03970 and SGL_RS03975 are separated by 116 nucleotides SGL_RS03965: SGL_RS03965 - R3H domain-containing nucleic acid-binding protein, at 442,164 to 443,933 _RS03965 SGL_RS03970: SGL_RS03970 - thiamine phosphate synthase, at 443,913 to 444,944 _RS03970 SGL_RS03975: SGL_RS03975 - BtpA/SgcQ family protein, at 445,061 to 445,924 _RS03975 Position (kb) 443 444 445Strain fitness (log2 ratio) -3 -2 -1 0 1at 442.940 kb on + strand, within SGL_RS03965at 443.076 kb on + strand, within SGL_RS03965at 443.093 kb on - strand, within SGL_RS03965at 443.198 kb on + strand, within SGL_RS03965at 443.358 kb on + strand, within SGL_RS03965at 443.363 kb on + strand, within SGL_RS03965at 443.371 kb on - strand, within SGL_RS03965at 443.371 kb on - strand, within SGL_RS03965at 443.371 kb on - strand, within SGL_RS03965at 443.525 kb on + strand, within SGL_RS03965at 443.561 kb on + strand, within SGL_RS03965at 443.926 kb on - strandat 443.966 kb on + strandat 444.013 kb on - strandat 444.018 kb on - strand, within SGL_RS03970at 444.072 kb on - strand, within SGL_RS03970at 444.144 kb on + strand, within SGL_RS03970at 444.152 kb on - strand, within SGL_RS03970at 444.161 kb on + strand, within SGL_RS03970at 444.426 kb on - strand, within SGL_RS03970at 444.568 kb on + strand, within SGL_RS03970at 444.623 kb on - strand, within SGL_RS03970at 444.664 kb on - strand, within SGL_RS03970at 444.783 kb on - strand, within SGL_RS03970at 444.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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442,940 + SGL_RS03965 0.44 -0.4
443,076 + SGL_RS03965 0.52 +0.5
443,093 - SGL_RS03965 0.52 +0.0
443,198 + SGL_RS03965 0.58 +0.1
443,358 + SGL_RS03965 0.67 -0.5
443,363 + SGL_RS03965 0.68 -0.2
443,371 - SGL_RS03965 0.68 -0.3
443,371 - SGL_RS03965 0.68 -0.4
443,371 - SGL_RS03965 0.68 -0.2
443,525 + SGL_RS03965 0.77 +0.2
443,561 + SGL_RS03965 0.79 -0.4
443,926 - +0.3
443,966 + -2.7
444,013 - -2.0
444,018 - SGL_RS03970 0.10 -1.7
444,072 - SGL_RS03970 0.15 -3.1
444,144 + SGL_RS03970 0.22 -3.3
444,152 - SGL_RS03970 0.23 -1.1
444,161 + SGL_RS03970 0.24 -2.4
444,426 - SGL_RS03970 0.50 -1.4
444,568 + SGL_RS03970 0.63 -2.1
444,623 - SGL_RS03970 0.69 -3.3
444,664 - SGL_RS03970 0.73 -3.1
444,783 - SGL_RS03970 0.84 -3.1
444,899 - -3.1

Or see this region's nucleotide sequence