Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03785 and SGL_RS03790 are separated by 158 nucleotides SGL_RS03790 and SGL_RS19170 are separated by 44 nucleotides SGL_RS19170 and SGL_RS03800 are separated by 79 nucleotides
SGL_RS03785: SGL_RS03785 - glycosyltransferase family 2 protein, at 396,057 to 396,878
_RS03785
SGL_RS03790: SGL_RS03790 - GTPase ObgE, at 397,037 to 398,143
_RS03790
SGL_RS19170: SGL_RS19170 - chlorophyll a/b-binding protein, at 398,188 to 398,361
_RS19170
SGL_RS03800: SGL_RS03800 - hydroxyacylglutathione hydrolase, at 398,441 to 399,214
_RS03800
Position (kb) 397
398
399 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 396.062 kb on - strand at 396.097 kb on + strand at 396.401 kb on + strand, within SGL_RS03785 at 396.406 kb on + strand, within SGL_RS03785 at 396.408 kb on + strand, within SGL_RS03785 at 396.408 kb on + strand, within SGL_RS03785 at 396.416 kb on - strand, within SGL_RS03785 at 396.432 kb on - strand, within SGL_RS03785 at 396.432 kb on - strand, within SGL_RS03785 at 396.530 kb on - strand, within SGL_RS03785 at 396.530 kb on - strand, within SGL_RS03785 at 396.668 kb on - strand, within SGL_RS03785 at 396.949 kb on + strand at 396.957 kb on - strand at 396.957 kb on - strand at 396.964 kb on + strand at 397.149 kb on + strand, within SGL_RS03790 at 397.156 kb on - strand, within SGL_RS03790 at 397.167 kb on - strand, within SGL_RS03790 at 397.330 kb on - strand, within SGL_RS03790 at 397.363 kb on - strand, within SGL_RS03790 at 397.368 kb on - strand, within SGL_RS03790 at 397.497 kb on - strand, within SGL_RS03790 at 397.611 kb on - strand, within SGL_RS03790 at 397.673 kb on + strand, within SGL_RS03790 at 397.861 kb on + strand, within SGL_RS03790 at 398.045 kb on + strand at 398.052 kb on + strand at 398.108 kb on + strand at 398.211 kb on + strand, within SGL_RS19170 at 398.335 kb on + strand, within SGL_RS19170 at 398.345 kb on + strand at 398.345 kb on + strand at 398.355 kb on + strand at 398.363 kb on - strand at 398.411 kb on + strand at 398.611 kb on - strand, within SGL_RS03800 at 398.613 kb on + strand, within SGL_RS03800 at 398.613 kb on + strand, within SGL_RS03800 at 398.621 kb on - strand, within SGL_RS03800 at 398.655 kb on - strand, within SGL_RS03800 at 398.718 kb on + strand, within SGL_RS03800 at 398.749 kb on - strand, within SGL_RS03800 at 398.873 kb on + strand, within SGL_RS03800 at 399.019 kb on + strand, within SGL_RS03800 at 399.037 kb on + strand, within SGL_RS03800 at 399.096 kb on + strand, within SGL_RS03800 at 399.134 kb on - strand, within SGL_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 396,062 - +0.1 396,097 + -0.2 396,401 + SGL_RS03785 0.42 +0.5 396,406 + SGL_RS03785 0.42 +0.3 396,408 + SGL_RS03785 0.43 -0.2 396,408 + SGL_RS03785 0.43 +0.1 396,416 - SGL_RS03785 0.44 -0.3 396,432 - SGL_RS03785 0.46 +0.3 396,432 - SGL_RS03785 0.46 -0.1 396,530 - SGL_RS03785 0.58 +0.7 396,530 - SGL_RS03785 0.58 +0.0 396,668 - SGL_RS03785 0.74 -0.1 396,949 + +0.2 396,957 - +0.1 396,957 - -0.4 396,964 + +0.1 397,149 + SGL_RS03790 0.10 -3.3 397,156 - SGL_RS03790 0.11 -3.9 397,167 - SGL_RS03790 0.12 -2.7 397,330 - SGL_RS03790 0.26 -2.7 397,363 - SGL_RS03790 0.29 -2.7 397,368 - SGL_RS03790 0.30 -3.3 397,497 - SGL_RS03790 0.42 -1.7 397,611 - SGL_RS03790 0.52 -3.1 397,673 + SGL_RS03790 0.57 -3.3 397,861 + SGL_RS03790 0.74 -4.2 398,045 + -0.0 398,052 + -0.2 398,108 + -0.0 398,211 + SGL_RS19170 0.13 +0.2 398,335 + SGL_RS19170 0.84 -1.0 398,345 + +0.3 398,345 + +0.3 398,355 + +0.1 398,363 - +0.2 398,411 + +0.8 398,611 - SGL_RS03800 0.22 +0.3 398,613 + SGL_RS03800 0.22 -0.2 398,613 + SGL_RS03800 0.22 -0.1 398,621 - SGL_RS03800 0.23 +0.2 398,655 - SGL_RS03800 0.28 +0.2 398,718 + SGL_RS03800 0.36 -0.0 398,749 - SGL_RS03800 0.40 -0.2 398,873 + SGL_RS03800 0.56 +0.1 399,019 + SGL_RS03800 0.75 +0.0 399,037 + SGL_RS03800 0.77 -0.3 399,096 + SGL_RS03800 0.85 -0.3 399,134 - SGL_RS03800 0.90 -0.5
Or see this region's nucleotide sequence