Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02280

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02275 and SGL_RS02280 are separated by 645 nucleotidesSGL_RS02280 and SGL_RS02285 are separated by 83 nucleotidesSGL_RS02285 and SGL_RS02290 are separated by 9 nucleotides SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482 _RS02275 SGL_RS02280: SGL_RS02280 - Rne/Rng family ribonuclease, at 93,128 to 95,152 _RS02280 SGL_RS02285: SGL_RS02285 - ribonuclease HII, at 95,236 to 95,808 _RS02285 SGL_RS02290: SGL_RS02290 - 8-oxo-dGTP diphosphatase MutT, at 95,818 to 96,228 _RS02290 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 92.354 kb on + strand, within SGL_RS02275at 92.408 kb on + strandat 92.416 kb on - strandat 92.444 kb on - strandat 92.452 kb on + strandat 92.489 kb on + strandat 92.499 kb on - strandat 92.523 kb on + strandat 92.609 kb on + strandat 92.705 kb on - strandat 92.881 kb on + strandat 92.995 kb on + strandat 93.038 kb on + strandat 94.499 kb on + strand, within SGL_RS02280at 94.704 kb on - strand, within SGL_RS02280at 94.723 kb on + strand, within SGL_RS02280at 94.859 kb on + strand, within SGL_RS02280at 94.881 kb on - strand, within SGL_RS02280at 94.907 kb on - strand, within SGL_RS02280at 94.926 kb on - strand, within SGL_RS02280at 95.153 kb on + strandat 95.339 kb on + strand, within SGL_RS02285at 95.346 kb on + strand, within SGL_RS02285at 95.380 kb on + strand, within SGL_RS02285at 95.385 kb on + strand, within SGL_RS02285at 95.397 kb on + strand, within SGL_RS02285at 95.405 kb on - strand, within SGL_RS02285at 95.407 kb on + strand, within SGL_RS02285at 95.407 kb on + strand, within SGL_RS02285at 95.413 kb on + strand, within SGL_RS02285at 95.452 kb on - strand, within SGL_RS02285at 95.462 kb on - strand, within SGL_RS02285at 95.464 kb on + strand, within SGL_RS02285at 95.473 kb on + strand, within SGL_RS02285at 95.556 kb on - strand, within SGL_RS02285at 95.697 kb on - strand, within SGL_RS02285at 95.707 kb on - strand, within SGL_RS02285at 95.753 kb on - strandat 95.766 kb on - strandat 95.937 kb on - strand, within SGL_RS02290at 95.938 kb on - strand, within SGL_RS02290at 95.975 kb on + strand, within SGL_RS02290at 96.000 kb on + strand, within SGL_RS02290at 96.008 kb on - strand, within SGL_RS02290at 96.010 kb on + strand, within SGL_RS02290at 96.078 kb on - strand, within SGL_RS02290at 96.091 kb on - strand, within SGL_RS02290

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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92,354 + SGL_RS02275 0.87 -0.8
92,408 + +0.1
92,416 - +0.3
92,444 - -0.0
92,452 + -0.5
92,489 + +0.2
92,499 - +0.3
92,523 + -1.2
92,609 + -3.7
92,705 - -3.6
92,881 + -3.0
92,995 + -2.2
93,038 + -2.3
94,499 + SGL_RS02280 0.68 -1.7
94,704 - SGL_RS02280 0.78 -4.2
94,723 + SGL_RS02280 0.79 -2.5
94,859 + SGL_RS02280 0.85 -1.7
94,881 - SGL_RS02280 0.87 -0.5
94,907 - SGL_RS02280 0.88 -0.6
94,926 - SGL_RS02280 0.89 -1.3
95,153 + +0.6
95,339 + SGL_RS02285 0.18 -0.2
95,346 + SGL_RS02285 0.19 +0.4
95,380 + SGL_RS02285 0.25 +0.3
95,385 + SGL_RS02285 0.26 -0.0
95,397 + SGL_RS02285 0.28 +0.5
95,405 - SGL_RS02285 0.29 +0.0
95,407 + SGL_RS02285 0.30 +0.6
95,407 + SGL_RS02285 0.30 -0.1
95,413 + SGL_RS02285 0.31 +0.3
95,452 - SGL_RS02285 0.38 -0.4
95,462 - SGL_RS02285 0.39 +0.1
95,464 + SGL_RS02285 0.40 -0.1
95,473 + SGL_RS02285 0.41 -0.4
95,556 - SGL_RS02285 0.56 +0.1
95,697 - SGL_RS02285 0.80 -1.0
95,707 - SGL_RS02285 0.82 +0.1
95,753 - +0.6
95,766 - +1.4
95,937 - SGL_RS02290 0.29 +0.4
95,938 - SGL_RS02290 0.29 +0.1
95,975 + SGL_RS02290 0.38 -0.1
96,000 + SGL_RS02290 0.44 +0.1
96,008 - SGL_RS02290 0.46 -0.4
96,010 + SGL_RS02290 0.47 +0.0
96,078 - SGL_RS02290 0.63 -0.1
96,091 - SGL_RS02290 0.66 -0.4

Or see this region's nucleotide sequence