Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02275 and SGL_RS02280 are separated by 645 nucleotides SGL_RS02280 and SGL_RS02285 are separated by 83 nucleotides SGL_RS02285 and SGL_RS02290 are separated by 9 nucleotides
SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482
_RS02275
SGL_RS02280: SGL_RS02280 - Rne/Rng family ribonuclease, at 93,128 to 95,152
_RS02280
SGL_RS02285: SGL_RS02285 - ribonuclease HII, at 95,236 to 95,808
_RS02285
SGL_RS02290: SGL_RS02290 - 8-oxo-dGTP diphosphatase MutT, at 95,818 to 96,228
_RS02290
Position (kb)
93
94
95
96 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 92.354 kb on + strand, within SGL_RS02275 at 92.408 kb on + strand at 92.416 kb on - strand at 92.444 kb on - strand at 92.452 kb on + strand at 92.489 kb on + strand at 92.499 kb on - strand at 92.523 kb on + strand at 92.609 kb on + strand at 92.705 kb on - strand at 92.881 kb on + strand at 92.995 kb on + strand at 93.038 kb on + strand at 94.499 kb on + strand, within SGL_RS02280 at 94.704 kb on - strand, within SGL_RS02280 at 94.723 kb on + strand, within SGL_RS02280 at 94.859 kb on + strand, within SGL_RS02280 at 94.881 kb on - strand, within SGL_RS02280 at 94.907 kb on - strand, within SGL_RS02280 at 94.926 kb on - strand, within SGL_RS02280 at 95.153 kb on + strand at 95.339 kb on + strand, within SGL_RS02285 at 95.346 kb on + strand, within SGL_RS02285 at 95.380 kb on + strand, within SGL_RS02285 at 95.385 kb on + strand, within SGL_RS02285 at 95.397 kb on + strand, within SGL_RS02285 at 95.405 kb on - strand, within SGL_RS02285 at 95.407 kb on + strand, within SGL_RS02285 at 95.407 kb on + strand, within SGL_RS02285 at 95.413 kb on + strand, within SGL_RS02285 at 95.452 kb on - strand, within SGL_RS02285 at 95.462 kb on - strand, within SGL_RS02285 at 95.464 kb on + strand, within SGL_RS02285 at 95.473 kb on + strand, within SGL_RS02285 at 95.556 kb on - strand, within SGL_RS02285 at 95.697 kb on - strand, within SGL_RS02285 at 95.707 kb on - strand, within SGL_RS02285 at 95.753 kb on - strand at 95.766 kb on - strand at 95.937 kb on - strand, within SGL_RS02290 at 95.938 kb on - strand, within SGL_RS02290 at 95.975 kb on + strand, within SGL_RS02290 at 96.000 kb on + strand, within SGL_RS02290 at 96.008 kb on - strand, within SGL_RS02290 at 96.010 kb on + strand, within SGL_RS02290 at 96.078 kb on - strand, within SGL_RS02290 at 96.091 kb on - strand, within SGL_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 92,354 + SGL_RS02275 0.87 -0.8 92,408 + +0.1 92,416 - +0.3 92,444 - -0.0 92,452 + -0.5 92,489 + +0.2 92,499 - +0.3 92,523 + -1.2 92,609 + -3.7 92,705 - -3.6 92,881 + -3.0 92,995 + -2.2 93,038 + -2.3 94,499 + SGL_RS02280 0.68 -1.7 94,704 - SGL_RS02280 0.78 -4.2 94,723 + SGL_RS02280 0.79 -2.5 94,859 + SGL_RS02280 0.85 -1.7 94,881 - SGL_RS02280 0.87 -0.5 94,907 - SGL_RS02280 0.88 -0.6 94,926 - SGL_RS02280 0.89 -1.3 95,153 + +0.6 95,339 + SGL_RS02285 0.18 -0.2 95,346 + SGL_RS02285 0.19 +0.4 95,380 + SGL_RS02285 0.25 +0.3 95,385 + SGL_RS02285 0.26 -0.0 95,397 + SGL_RS02285 0.28 +0.5 95,405 - SGL_RS02285 0.29 +0.0 95,407 + SGL_RS02285 0.30 +0.6 95,407 + SGL_RS02285 0.30 -0.1 95,413 + SGL_RS02285 0.31 +0.3 95,452 - SGL_RS02285 0.38 -0.4 95,462 - SGL_RS02285 0.39 +0.1 95,464 + SGL_RS02285 0.40 -0.1 95,473 + SGL_RS02285 0.41 -0.4 95,556 - SGL_RS02285 0.56 +0.1 95,697 - SGL_RS02285 0.80 -1.0 95,707 - SGL_RS02285 0.82 +0.1 95,753 - +0.6 95,766 - +1.4 95,937 - SGL_RS02290 0.29 +0.4 95,938 - SGL_RS02290 0.29 +0.1 95,975 + SGL_RS02290 0.38 -0.1 96,000 + SGL_RS02290 0.44 +0.1 96,008 - SGL_RS02290 0.46 -0.4 96,010 + SGL_RS02290 0.47 +0.0 96,078 - SGL_RS02290 0.63 -0.1 96,091 - SGL_RS02290 0.66 -0.4
Or see this region's nucleotide sequence