Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17905 and SGL_RS19140 are separated by 607 nucleotides SGL_RS19140 and SGL_RS19525 overlap by 48 nucleotides SGL_RS19525 and SGL_RS17920 overlap by 4 nucleotides SGL_RS17920 and SGL_RS17925 are separated by 440 nucleotides
SGL_RS17905: SGL_RS17905 - response regulator transcription factor, at 3,473,513 to 3,474,199
_RS17905
SGL_RS19140: SGL_RS19140 - DUF433 domain-containing protein, at 3,474,807 to 3,474,998
_RS19140
SGL_RS19525: SGL_RS19525 - hypothetical protein, at 3,474,951 to 3,475,184
_RS19525
SGL_RS17920: SGL_RS17920 - PIN domain-containing protein, at 3,475,181 to 3,475,618
_RS17920
SGL_RS17925: SGL_RS17925 - hypothetical protein, at 3,476,059 to 3,476,595
_RS17925
Position (kb) 3475
3476 Strain fitness (log2 ratio) -1
0
1 at 3474.196 kb on - strand at 3474.595 kb on - strand at 3474.698 kb on - strand at 3474.744 kb on - strand at 3474.844 kb on - strand, within SGL_RS19140 at 3474.943 kb on + strand, within SGL_RS19140 at 3474.950 kb on - strand, within SGL_RS19140 at 3474.992 kb on + strand at 3475.038 kb on - strand, within SGL_RS19525 at 3475.205 kb on - strand at 3475.207 kb on + strand at 3475.355 kb on + strand, within SGL_RS17920 at 3475.397 kb on + strand, within SGL_RS17920 at 3475.425 kb on + strand, within SGL_RS17920 at 3475.492 kb on - strand, within SGL_RS17920 at 3476.198 kb on + strand, within SGL_RS17925 at 3476.198 kb on + strand, within SGL_RS17925 at 3476.220 kb on + strand, within SGL_RS17925 at 3476.334 kb on - strand, within SGL_RS17925 at 3476.359 kb on - strand, within SGL_RS17925 at 3476.384 kb on + strand, within SGL_RS17925 at 3476.442 kb on - strand, within SGL_RS17925
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 3,474,196 - -0.4 3,474,595 - +0.3 3,474,698 - -0.1 3,474,744 - -0.1 3,474,844 - SGL_RS19140 0.19 -0.3 3,474,943 + SGL_RS19140 0.71 +0.1 3,474,950 - SGL_RS19140 0.74 -0.1 3,474,992 + +0.2 3,475,038 - SGL_RS19525 0.37 +0.1 3,475,205 - +0.1 3,475,207 + -0.1 3,475,355 + SGL_RS17920 0.40 +0.5 3,475,397 + SGL_RS17920 0.49 +0.3 3,475,425 + SGL_RS17920 0.56 +0.7 3,475,492 - SGL_RS17920 0.71 +0.2 3,476,198 + SGL_RS17925 0.26 -0.4 3,476,198 + SGL_RS17925 0.26 +0.3 3,476,220 + SGL_RS17925 0.30 +0.1 3,476,334 - SGL_RS17925 0.51 +0.1 3,476,359 - SGL_RS17925 0.56 +0.6 3,476,384 + SGL_RS17925 0.61 +0.2 3,476,442 - SGL_RS17925 0.71 +0.7
Or see this region's nucleotide sequence