Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16950

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16945 and SGL_RS16950 are separated by 21 nucleotidesSGL_RS16950 and SGL_RS16955 are separated by 249 nucleotides SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670 _RS16945 SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887 _RS16950 SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276 _RS16955 Position (kb) 3257 3258 3259 3260Strain fitness (log2 ratio) -2 -1 0 1at 3256.730 kb on - strand, within SGL_RS16945at 3256.928 kb on - strand, within SGL_RS16945at 3256.932 kb on + strand, within SGL_RS16945at 3256.973 kb on - strand, within SGL_RS16945at 3257.015 kb on + strand, within SGL_RS16945at 3257.167 kb on + strand, within SGL_RS16945at 3257.410 kb on - strandat 3257.613 kb on + strandat 3257.649 kb on + strandat 3257.824 kb on + strandat 3258.000 kb on + strand, within SGL_RS16950at 3258.248 kb on - strand, within SGL_RS16950at 3258.343 kb on + strand, within SGL_RS16950at 3258.361 kb on + strand, within SGL_RS16950at 3258.386 kb on - strand, within SGL_RS16950at 3258.401 kb on - strand, within SGL_RS16950at 3258.423 kb on + strand, within SGL_RS16950at 3258.522 kb on - strand, within SGL_RS16950at 3258.522 kb on - strand, within SGL_RS16950at 3258.552 kb on - strand, within SGL_RS16950at 3258.625 kb on - strand, within SGL_RS16950at 3258.940 kb on - strand, within SGL_RS16950at 3259.198 kb on + strand, within SGL_RS16950at 3259.470 kb on + strand, within SGL_RS16950at 3259.639 kb on - strand, within SGL_RS16950at 3259.772 kb on + strandat 3259.876 kb on + strandat 3260.042 kb on - strandat 3260.042 kb on - strandat 3260.055 kb on - strandat 3260.167 kb on - strandat 3260.357 kb on + strand, within SGL_RS16955at 3260.487 kb on + strand, within SGL_RS16955at 3260.623 kb on - strand, within SGL_RS16955at 3260.747 kb on - strand, within SGL_RS16955at 3260.754 kb on + strand, within SGL_RS16955at 3260.772 kb on - strand, within SGL_RS16955at 3260.794 kb on - strand, within SGL_RS16955

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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3,256,730 - SGL_RS16945 0.69 -0.0
3,256,928 - SGL_RS16945 0.76 -1.4
3,256,932 + SGL_RS16945 0.76 -0.4
3,256,973 - SGL_RS16945 0.77 +0.0
3,257,015 + SGL_RS16945 0.79 -0.0
3,257,167 + SGL_RS16945 0.84 -0.1
3,257,410 - -0.1
3,257,613 + -0.2
3,257,649 + +0.1
3,257,824 + -1.0
3,258,000 + SGL_RS16950 0.14 -0.7
3,258,248 - SGL_RS16950 0.25 -1.4
3,258,343 + SGL_RS16950 0.30 -0.7
3,258,361 + SGL_RS16950 0.30 -1.2
3,258,386 - SGL_RS16950 0.32 -1.2
3,258,401 - SGL_RS16950 0.32 -1.2
3,258,423 + SGL_RS16950 0.33 -1.3
3,258,522 - SGL_RS16950 0.38 -2.1
3,258,522 - SGL_RS16950 0.38 -1.3
3,258,552 - SGL_RS16950 0.39 -1.4
3,258,625 - SGL_RS16950 0.42 -0.4
3,258,940 - SGL_RS16950 0.57 -0.4
3,259,198 + SGL_RS16950 0.69 -1.5
3,259,470 + SGL_RS16950 0.81 -1.7
3,259,639 - SGL_RS16950 0.89 -0.6
3,259,772 + -1.8
3,259,876 + -0.8
3,260,042 - -0.1
3,260,042 - +0.2
3,260,055 - +0.0
3,260,167 - +0.0
3,260,357 + SGL_RS16955 0.19 -0.4
3,260,487 + SGL_RS16955 0.31 -1.0
3,260,623 - SGL_RS16955 0.43 -0.4
3,260,747 - SGL_RS16955 0.54 +0.2
3,260,754 + SGL_RS16955 0.54 -0.1
3,260,772 - SGL_RS16955 0.56 -0.3
3,260,794 - SGL_RS16955 0.58 +0.1

Or see this region's nucleotide sequence