Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15865

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15845 and SGL_RS15850 are separated by 168 nucleotidesSGL_RS15850 and SGL_RS15855 are separated by 45 nucleotidesSGL_RS15855 and SGL_RS15860 are separated by 9 nucleotidesSGL_RS15860 and SGL_RS15865 are separated by 57 nucleotidesSGL_RS15865 and SGL_RS15870 are separated by 76 nucleotides SGL_RS15845: SGL_RS15845 - polyphosphate kinase 1, at 3,004,454 to 3,006,640 _RS15845 SGL_RS15850: SGL_RS15850 - hypothetical protein, at 3,006,809 to 3,007,003 _RS15850 SGL_RS15855: SGL_RS15855 - hypothetical protein, at 3,007,049 to 3,007,270 _RS15855 SGL_RS15860: SGL_RS15860 - cell division topological specificity factor MinE, at 3,007,280 to 3,007,573 _RS15860 SGL_RS15865: SGL_RS15865 - septum site-determining protein MinD, at 3,007,631 to 3,008,431 _RS15865 SGL_RS15870: SGL_RS15870 - septum site-determining protein MinC, at 3,008,508 to 3,009,251 _RS15870 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -3 -2 -1 0 1at 3006.631 kb on - strandat 3006.635 kb on + strandat 3006.643 kb on - strandat 3006.693 kb on + strandat 3006.693 kb on + strandat 3006.694 kb on + strandat 3006.701 kb on - strandat 3006.701 kb on - strandat 3007.024 kb on + strandat 3007.106 kb on - strand, within SGL_RS15855at 3007.168 kb on - strand, within SGL_RS15855at 3007.220 kb on + strand, within SGL_RS15855at 3007.585 kb on - strandat 3007.599 kb on - strandat 3007.635 kb on + strandat 3007.679 kb on - strandat 3007.679 kb on - strandat 3007.783 kb on - strand, within SGL_RS15865at 3007.985 kb on - strand, within SGL_RS15865at 3007.996 kb on + strand, within SGL_RS15865at 3008.348 kb on + strand, within SGL_RS15865at 3008.416 kb on + strandat 3008.472 kb on - strandat 3008.627 kb on - strand, within SGL_RS15870at 3008.708 kb on - strand, within SGL_RS15870at 3008.763 kb on - strand, within SGL_RS15870at 3008.784 kb on + strand, within SGL_RS15870at 3008.836 kb on - strand, within SGL_RS15870at 3008.836 kb on - strand, within SGL_RS15870at 3008.866 kb on - strand, within SGL_RS15870at 3008.896 kb on + strand, within SGL_RS15870at 3008.909 kb on - strand, within SGL_RS15870at 3008.958 kb on + strand, within SGL_RS15870at 3008.970 kb on + strand, within SGL_RS15870at 3009.143 kb on + strand, within SGL_RS15870at 3009.143 kb on + strand, within SGL_RS15870at 3009.151 kb on - strand, within SGL_RS15870at 3009.151 kb on - strand, within SGL_RS15870at 3009.229 kb on + strandat 3009.229 kb on + strandat 3009.237 kb on - strandat 3009.291 kb on - strandat 3009.291 kb on - strandat 3009.291 kb on - strandat 3009.320 kb on + strandat 3009.328 kb on - strandat 3009.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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3,006,631 - +0.3
3,006,635 + +0.4
3,006,643 - -1.3
3,006,693 + +0.4
3,006,693 + -0.0
3,006,694 + +0.3
3,006,701 - +0.0
3,006,701 - -1.0
3,007,024 + +0.0
3,007,106 - SGL_RS15855 0.26 -0.0
3,007,168 - SGL_RS15855 0.54 -0.3
3,007,220 + SGL_RS15855 0.77 -0.0
3,007,585 - -0.4
3,007,599 - +0.1
3,007,635 + -3.0
3,007,679 - -1.9
3,007,679 - -1.0
3,007,783 - SGL_RS15865 0.19 -2.3
3,007,985 - SGL_RS15865 0.44 -1.1
3,007,996 + SGL_RS15865 0.46 -2.0
3,008,348 + SGL_RS15865 0.90 -1.1
3,008,416 + -1.1
3,008,472 - -2.0
3,008,627 - SGL_RS15870 0.16 -1.2
3,008,708 - SGL_RS15870 0.27 -1.9
3,008,763 - SGL_RS15870 0.34 -1.7
3,008,784 + SGL_RS15870 0.37 -1.2
3,008,836 - SGL_RS15870 0.44 -2.5
3,008,836 - SGL_RS15870 0.44 -2.1
3,008,866 - SGL_RS15870 0.48 -2.4
3,008,896 + SGL_RS15870 0.52 -1.6
3,008,909 - SGL_RS15870 0.54 -1.4
3,008,958 + SGL_RS15870 0.60 -1.3
3,008,970 + SGL_RS15870 0.62 -1.7
3,009,143 + SGL_RS15870 0.85 -3.6
3,009,143 + SGL_RS15870 0.85 -1.1
3,009,151 - SGL_RS15870 0.86 -2.2
3,009,151 - SGL_RS15870 0.86 -0.9
3,009,229 + -1.4
3,009,229 + -2.9
3,009,237 - -0.7
3,009,291 - -0.4
3,009,291 - -0.5
3,009,291 - -0.7
3,009,320 + +0.2
3,009,328 - +0.1
3,009,384 - +0.3

Or see this region's nucleotide sequence