Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13175

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13170 and SGL_RS13175 are separated by 145 nucleotidesSGL_RS13175 and SGL_RS13180 are separated by 200 nucleotidesSGL_RS13180 and SGL_RS13185 are separated by 21 nucleotides SGL_RS13170: SGL_RS13170 - histidine kinase, at 2,421,536 to 2,422,687 _RS13170 SGL_RS13175: SGL_RS13175 - GerMN domain-containing protein, at 2,422,833 to 2,423,420 _RS13175 SGL_RS13180: SGL_RS13180 - triose-phosphate isomerase, at 2,423,621 to 2,424,349 _RS13180 SGL_RS13185: SGL_RS13185 - AI-2E family transporter, at 2,424,371 to 2,425,390 _RS13185 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -2 -1 0 1at 2422.181 kb on - strand, within SGL_RS13170at 2422.183 kb on - strand, within SGL_RS13170at 2422.207 kb on - strand, within SGL_RS13170at 2422.231 kb on + strand, within SGL_RS13170at 2422.609 kb on - strandat 2422.727 kb on + strandat 2422.762 kb on + strandat 2422.804 kb on - strandat 2422.917 kb on + strand, within SGL_RS13175at 2423.019 kb on + strand, within SGL_RS13175at 2423.048 kb on + strand, within SGL_RS13175at 2423.090 kb on - strand, within SGL_RS13175at 2423.326 kb on - strand, within SGL_RS13175at 2423.381 kb on - strandat 2423.562 kb on - strandat 2424.098 kb on - strand, within SGL_RS13180at 2424.375 kb on + strandat 2424.392 kb on + strandat 2424.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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2,422,181 - SGL_RS13170 0.56 -0.4
2,422,183 - SGL_RS13170 0.56 -0.3
2,422,207 - SGL_RS13170 0.58 -1.4
2,422,231 + SGL_RS13170 0.60 -0.6
2,422,609 - +0.3
2,422,727 + -0.5
2,422,762 + -0.7
2,422,804 - -0.5
2,422,917 + SGL_RS13175 0.14 -1.1
2,423,019 + SGL_RS13175 0.32 -1.3
2,423,048 + SGL_RS13175 0.37 -0.5
2,423,090 - SGL_RS13175 0.44 -0.4
2,423,326 - SGL_RS13175 0.84 -1.0
2,423,381 - -0.5
2,423,562 - +0.1
2,424,098 - SGL_RS13180 0.65 -2.5
2,424,375 + -0.5
2,424,392 + -0.9
2,424,392 + -0.2

Or see this region's nucleotide sequence