Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10550

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10540 and SGL_RS10545 are separated by 6 nucleotidesSGL_RS10545 and SGL_RS10550 are separated by 65 nucleotidesSGL_RS10550 and SGL_RS10555 are separated by 208 nucleotides SGL_RS10540: SGL_RS10540 - C40 family peptidase, at 1,832,360 to 1,833,169 _RS10540 SGL_RS10545: SGL_RS10545 - hypothetical protein, at 1,833,176 to 1,833,589 _RS10545 SGL_RS10550: SGL_RS10550 - GUN4 domain-containing protein, at 1,833,655 to 1,834,299 _RS10550 SGL_RS10555: SGL_RS10555 - aspartate carbamoyltransferase, at 1,834,508 to 1,835,503 _RS10555 Position (kb) 1833 1834 1835Strain fitness (log2 ratio) -2 -1 0 1at 1833.154 kb on - strandat 1833.250 kb on - strand, within SGL_RS10545at 1833.290 kb on + strand, within SGL_RS10545at 1833.378 kb on + strand, within SGL_RS10545at 1833.554 kb on - strandat 1833.590 kb on + strandat 1833.598 kb on + strandat 1833.689 kb on - strandat 1833.983 kb on + strand, within SGL_RS10550at 1833.991 kb on - strand, within SGL_RS10550at 1834.051 kb on + strand, within SGL_RS10550at 1834.059 kb on - strand, within SGL_RS10550at 1834.059 kb on - strand, within SGL_RS10550at 1834.220 kb on - strand, within SGL_RS10550at 1834.347 kb on + strandat 1834.401 kb on - strandat 1834.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,833,154 - +0.3
1,833,250 - SGL_RS10545 0.18 +1.0
1,833,290 + SGL_RS10545 0.28 +0.5
1,833,378 + SGL_RS10545 0.49 -0.8
1,833,554 - -0.1
1,833,590 + +0.1
1,833,598 + -0.3
1,833,689 - -0.2
1,833,983 + SGL_RS10550 0.51 +0.2
1,833,991 - SGL_RS10550 0.52 +1.4
1,834,051 + SGL_RS10550 0.61 -0.0
1,834,059 - SGL_RS10550 0.63 +0.8
1,834,059 - SGL_RS10550 0.63 +0.3
1,834,220 - SGL_RS10550 0.88 +0.0
1,834,347 + +0.2
1,834,401 - -0.3
1,834,486 - -2.4

Or see this region's nucleotide sequence