Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10245

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10240 and SGL_RS10245 are separated by 271 nucleotidesSGL_RS10245 and SGL_RS10250 are separated by 36 nucleotides SGL_RS10240: SGL_RS10240 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,768,748 to 1,770,418 _RS10240 SGL_RS10245: SGL_RS10245 - glycoside hydrolase family protein, at 1,770,690 to 1,771,421 _RS10245 SGL_RS10250: SGL_RS10250 - imidazole glycerol phosphate synthase subunit HisF, at 1,771,458 to 1,772,243 _RS10250 Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -3 -2 -1 0 1at 1770.602 kb on + strandat 1770.640 kb on + strandat 1770.716 kb on + strandat 1770.777 kb on + strand, within SGL_RS10245at 1770.782 kb on + strand, within SGL_RS10245at 1770.791 kb on - strand, within SGL_RS10245at 1770.831 kb on - strand, within SGL_RS10245at 1770.837 kb on - strand, within SGL_RS10245at 1770.968 kb on + strand, within SGL_RS10245at 1770.996 kb on + strand, within SGL_RS10245at 1771.183 kb on + strand, within SGL_RS10245at 1771.315 kb on + strand, within SGL_RS10245at 1772.207 kb on + strandat 1772.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,770,602 + -0.2
1,770,640 + +0.3
1,770,716 + +0.0
1,770,777 + SGL_RS10245 0.12 -0.9
1,770,782 + SGL_RS10245 0.13 -1.3
1,770,791 - SGL_RS10245 0.14 -1.0
1,770,831 - SGL_RS10245 0.19 -1.6
1,770,837 - SGL_RS10245 0.20 -0.8
1,770,968 + SGL_RS10245 0.38 -1.0
1,770,996 + SGL_RS10245 0.42 -1.6
1,771,183 + SGL_RS10245 0.67 -2.7
1,771,315 + SGL_RS10245 0.85 -1.5
1,772,207 + -3.3
1,772,420 + +0.2

Or see this region's nucleotide sequence