Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08765

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08750 and SGL_RS08755 are separated by 45 nucleotidesSGL_RS08755 and SGL_RS08760 are separated by 40 nucleotidesSGL_RS08760 and SGL_RS08765 are separated by 42 nucleotidesSGL_RS08765 and SGL_RS08770 are separated by 78 nucleotidesSGL_RS08770 and SGL_RS08775 are separated by 129 nucleotides SGL_RS08750: SGL_RS08750 - YdcF family protein, at 1,469,013 to 1,469,801 _RS08750 SGL_RS08755: SGL_RS08755 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,469,847 to 1,470,347 _RS08755 SGL_RS08760: SGL_RS08760 - hypothetical protein, at 1,470,388 to 1,470,567 _RS08760 SGL_RS08765: SGL_RS08765 - 2-phosphosulfolactate phosphatase family protein, at 1,470,610 to 1,471,335 _RS08765 SGL_RS08770: SGL_RS08770 - nitroreductase family protein, at 1,471,414 to 1,472,019 _RS08770 SGL_RS08775: SGL_RS08775 - aspartate--tRNA ligase, at 1,472,149 to 1,473,948 _RS08775 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -3 -2 -1 0 1at 1469.615 kb on - strand, within SGL_RS08750at 1469.638 kb on - strand, within SGL_RS08750at 1470.483 kb on + strand, within SGL_RS08760at 1470.941 kb on + strand, within SGL_RS08765at 1470.950 kb on - strand, within SGL_RS08765at 1470.992 kb on - strand, within SGL_RS08765at 1471.080 kb on + strand, within SGL_RS08765

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,469,615 - SGL_RS08750 0.76 +0.8
1,469,638 - SGL_RS08750 0.79 -0.2
1,470,483 + SGL_RS08760 0.53 -0.3
1,470,941 + SGL_RS08765 0.46 -1.8
1,470,950 - SGL_RS08765 0.47 -3.3
1,470,992 - SGL_RS08765 0.53 -2.0
1,471,080 + SGL_RS08765 0.65 -2.1

Or see this region's nucleotide sequence