Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08175

Experiment: control for light_bubbling experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08170 and SGL_RS08175 are separated by 9 nucleotidesSGL_RS08175 and SGL_RS08180 are separated by 50 nucleotidesSGL_RS08180 and SGL_RS08185 are separated by 97 nucleotides SGL_RS08170: SGL_RS08170 - H(+)/Cl(-) exchange transporter ClcA, at 1,342,775 to 1,344,130 _RS08170 SGL_RS08175: SGL_RS08175 - serine hydrolase, at 1,344,140 to 1,345,066 _RS08175 SGL_RS08180: SGL_RS08180 - phycobiliprotein lyase, at 1,345,117 to 1,345,677 _RS08180 SGL_RS08185: SGL_RS08185 - hypothetical protein, at 1,345,775 to 1,346,023 _RS08185 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1at 1343.320 kb on - strand, within SGL_RS08170at 1343.417 kb on - strand, within SGL_RS08170at 1343.417 kb on - strand, within SGL_RS08170at 1343.417 kb on - strand, within SGL_RS08170at 1343.564 kb on - strand, within SGL_RS08170at 1343.648 kb on - strand, within SGL_RS08170at 1343.648 kb on - strand, within SGL_RS08170at 1343.648 kb on - strand, within SGL_RS08170at 1343.768 kb on + strand, within SGL_RS08170at 1343.883 kb on + strand, within SGL_RS08170at 1343.896 kb on - strand, within SGL_RS08170at 1343.954 kb on + strand, within SGL_RS08170at 1343.962 kb on - strand, within SGL_RS08170at 1344.012 kb on - strandat 1344.037 kb on + strandat 1344.294 kb on + strand, within SGL_RS08175at 1344.302 kb on - strand, within SGL_RS08175at 1344.426 kb on + strand, within SGL_RS08175at 1344.434 kb on - strand, within SGL_RS08175at 1344.460 kb on + strand, within SGL_RS08175at 1344.468 kb on - strand, within SGL_RS08175at 1344.645 kb on + strand, within SGL_RS08175at 1344.753 kb on + strand, within SGL_RS08175at 1344.876 kb on - strand, within SGL_RS08175at 1344.891 kb on + strand, within SGL_RS08175at 1344.934 kb on + strand, within SGL_RS08175at 1345.114 kb on + strandat 1345.122 kb on + strandat 1345.536 kb on - strand, within SGL_RS08180at 1345.689 kb on - strandat 1345.883 kb on - strand, within SGL_RS08185at 1346.012 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
remove
1,343,320 - SGL_RS08170 0.40 -0.1
1,343,417 - SGL_RS08170 0.47 -0.3
1,343,417 - SGL_RS08170 0.47 +0.9
1,343,417 - SGL_RS08170 0.47 +0.2
1,343,564 - SGL_RS08170 0.58 +0.2
1,343,648 - SGL_RS08170 0.64 -0.2
1,343,648 - SGL_RS08170 0.64 -0.2
1,343,648 - SGL_RS08170 0.64 -0.1
1,343,768 + SGL_RS08170 0.73 +0.2
1,343,883 + SGL_RS08170 0.82 -1.1
1,343,896 - SGL_RS08170 0.83 +0.5
1,343,954 + SGL_RS08170 0.87 +0.1
1,343,962 - SGL_RS08170 0.88 +0.2
1,344,012 - +0.1
1,344,037 + +0.0
1,344,294 + SGL_RS08175 0.17 -2.3
1,344,302 - SGL_RS08175 0.17 +0.0
1,344,426 + SGL_RS08175 0.31 -2.3
1,344,434 - SGL_RS08175 0.32 -2.1
1,344,460 + SGL_RS08175 0.35 -2.8
1,344,468 - SGL_RS08175 0.35 -2.4
1,344,645 + SGL_RS08175 0.54 -0.8
1,344,753 + SGL_RS08175 0.66 -2.6
1,344,876 - SGL_RS08175 0.79 -1.8
1,344,891 + SGL_RS08175 0.81 -2.3
1,344,934 + SGL_RS08175 0.86 -2.7
1,345,114 + +0.0
1,345,122 + +0.4
1,345,536 - SGL_RS08180 0.75 -1.3
1,345,689 - +0.2
1,345,883 - SGL_RS08185 0.43 -0.2
1,346,012 + -0.1

Or see this region's nucleotide sequence