Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08155

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08150 and SGL_RS08155 are separated by 8 nucleotidesSGL_RS08155 and SGL_RS08160 are separated by 56 nucleotidesSGL_RS08160 and SGL_RS08165 overlap by 11 nucleotides SGL_RS08150: SGL_RS08150 - deoxyribodipyrimidine photo-lyase, 8-HDF type, at 1,339,656 to 1,341,122 _RS08150 SGL_RS08155: SGL_RS08155 - Spy/CpxP family protein refolding chaperone, at 1,341,131 to 1,341,637 _RS08155 SGL_RS08160: SGL_RS08160 - hypothetical protein, at 1,341,694 to 1,342,062 _RS08160 SGL_RS08165: SGL_RS08165 - sigma-70 family RNA polymerase sigma factor, at 1,342,052 to 1,342,660 _RS08165 Position (kb) 1341 1342Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1340.215 kb on + strand, within SGL_RS08150at 1340.317 kb on - strand, within SGL_RS08150at 1340.319 kb on - strand, within SGL_RS08150at 1340.501 kb on - strand, within SGL_RS08150at 1340.585 kb on - strand, within SGL_RS08150at 1340.685 kb on + strand, within SGL_RS08150at 1340.765 kb on - strand, within SGL_RS08150at 1340.815 kb on + strand, within SGL_RS08150at 1340.828 kb on - strand, within SGL_RS08150at 1340.870 kb on - strand, within SGL_RS08150at 1340.920 kb on + strand, within SGL_RS08150at 1341.246 kb on - strand, within SGL_RS08155at 1341.480 kb on + strand, within SGL_RS08155at 1341.524 kb on + strand, within SGL_RS08155at 1341.735 kb on - strand, within SGL_RS08160at 1341.852 kb on + strand, within SGL_RS08160at 1341.876 kb on - strand, within SGL_RS08160at 1341.882 kb on - strand, within SGL_RS08160at 1341.916 kb on + strand, within SGL_RS08160at 1341.998 kb on - strand, within SGL_RS08160at 1342.004 kb on - strand, within SGL_RS08160at 1342.196 kb on + strand, within SGL_RS08165at 1342.204 kb on - strand, within SGL_RS08165at 1342.221 kb on - strand, within SGL_RS08165at 1342.225 kb on + strand, within SGL_RS08165at 1342.228 kb on - strand, within SGL_RS08165at 1342.281 kb on - strand, within SGL_RS08165at 1342.378 kb on - strand, within SGL_RS08165at 1342.463 kb on + strand, within SGL_RS08165

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,340,215 + SGL_RS08150 0.38 +0.4
1,340,317 - SGL_RS08150 0.45 +0.1
1,340,319 - SGL_RS08150 0.45 -0.2
1,340,501 - SGL_RS08150 0.58 +0.4
1,340,585 - SGL_RS08150 0.63 +0.8
1,340,685 + SGL_RS08150 0.70 -0.1
1,340,765 - SGL_RS08150 0.76 -1.4
1,340,815 + SGL_RS08150 0.79 -0.0
1,340,828 - SGL_RS08150 0.80 +1.2
1,340,870 - SGL_RS08150 0.83 -0.1
1,340,920 + SGL_RS08150 0.86 +0.2
1,341,246 - SGL_RS08155 0.23 -3.0
1,341,480 + SGL_RS08155 0.69 -1.8
1,341,524 + SGL_RS08155 0.78 -3.4
1,341,735 - SGL_RS08160 0.11 -1.2
1,341,852 + SGL_RS08160 0.43 -4.3
1,341,876 - SGL_RS08160 0.49 -1.0
1,341,882 - SGL_RS08160 0.51 -1.1
1,341,916 + SGL_RS08160 0.60 -3.8
1,341,998 - SGL_RS08160 0.82 -2.6
1,342,004 - SGL_RS08160 0.84 -2.1
1,342,196 + SGL_RS08165 0.24 +0.3
1,342,204 - SGL_RS08165 0.25 -0.2
1,342,221 - SGL_RS08165 0.28 +0.7
1,342,225 + SGL_RS08165 0.28 +0.1
1,342,228 - SGL_RS08165 0.29 +0.1
1,342,281 - SGL_RS08165 0.38 +0.1
1,342,378 - SGL_RS08165 0.54 -0.1
1,342,463 + SGL_RS08165 0.67 +0.1

Or see this region's nucleotide sequence