Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07870

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07865 and SGL_RS07870 overlap by 4 nucleotidesSGL_RS07870 and SGL_RS07875 are separated by 38 nucleotidesSGL_RS07875 and SGL_RS07880 are separated by 133 nucleotides SGL_RS07865: SGL_RS07865 - signal peptide peptidase SppA, at 1,281,361 to 1,283,193 _RS07865 SGL_RS07870: SGL_RS07870 - Ycf51 family protein, at 1,283,190 to 1,283,702 _RS07870 SGL_RS07875: SGL_RS07875 - alpha/beta hydrolase, at 1,283,741 to 1,284,526 _RS07875 SGL_RS07880: SGL_RS07880 - glutamyl-tRNA reductase, at 1,284,660 to 1,285,943 _RS07880 Position (kb) 1283 1284Strain fitness (log2 ratio) -2 -1 0 1at 1282.493 kb on - strand, within SGL_RS07865at 1282.596 kb on - strand, within SGL_RS07865at 1282.630 kb on + strand, within SGL_RS07865at 1282.975 kb on - strand, within SGL_RS07865at 1283.006 kb on - strand, within SGL_RS07865at 1283.012 kb on - strandat 1283.224 kb on + strandat 1283.301 kb on + strand, within SGL_RS07870at 1283.302 kb on + strand, within SGL_RS07870at 1283.320 kb on - strand, within SGL_RS07870at 1283.538 kb on + strand, within SGL_RS07870at 1283.539 kb on + strand, within SGL_RS07870at 1283.547 kb on - strand, within SGL_RS07870at 1283.762 kb on - strandat 1283.849 kb on + strand, within SGL_RS07875at 1283.857 kb on + strand, within SGL_RS07875at 1283.891 kb on - strand, within SGL_RS07875at 1283.893 kb on + strand, within SGL_RS07875at 1283.917 kb on + strand, within SGL_RS07875at 1283.920 kb on - strand, within SGL_RS07875at 1283.924 kb on + strand, within SGL_RS07875at 1283.924 kb on + strand, within SGL_RS07875at 1283.925 kb on - strand, within SGL_RS07875at 1283.955 kb on + strand, within SGL_RS07875at 1283.977 kb on - strand, within SGL_RS07875at 1284.000 kb on + strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.071 kb on + strand, within SGL_RS07875at 1284.095 kb on + strand, within SGL_RS07875at 1284.097 kb on - strand, within SGL_RS07875at 1284.185 kb on - strand, within SGL_RS07875at 1284.199 kb on + strand, within SGL_RS07875at 1284.214 kb on + strand, within SGL_RS07875at 1284.214 kb on + strand, within SGL_RS07875at 1284.266 kb on - strand, within SGL_RS07875at 1284.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,282,493 - SGL_RS07865 0.62 +0.0
1,282,596 - SGL_RS07865 0.67 -0.2
1,282,630 + SGL_RS07865 0.69 +0.0
1,282,975 - SGL_RS07865 0.88 +0.0
1,283,006 - SGL_RS07865 0.90 +1.0
1,283,012 - -0.3
1,283,224 + -0.1
1,283,301 + SGL_RS07870 0.22 -1.9
1,283,302 + SGL_RS07870 0.22 -1.8
1,283,320 - SGL_RS07870 0.25 -2.1
1,283,538 + SGL_RS07870 0.68 -0.6
1,283,539 + SGL_RS07870 0.68 +0.5
1,283,547 - SGL_RS07870 0.70 -2.3
1,283,762 - -0.2
1,283,849 + SGL_RS07875 0.14 +0.3
1,283,857 + SGL_RS07875 0.15 -0.1
1,283,891 - SGL_RS07875 0.19 -0.5
1,283,893 + SGL_RS07875 0.19 -0.3
1,283,917 + SGL_RS07875 0.22 +0.3
1,283,920 - SGL_RS07875 0.23 -0.0
1,283,924 + SGL_RS07875 0.23 -0.7
1,283,924 + SGL_RS07875 0.23 -0.2
1,283,925 - SGL_RS07875 0.23 -0.4
1,283,955 + SGL_RS07875 0.27 -0.0
1,283,977 - SGL_RS07875 0.30 -0.1
1,284,000 + SGL_RS07875 0.33 +0.0
1,284,018 - SGL_RS07875 0.35 -0.2
1,284,018 - SGL_RS07875 0.35 -0.2
1,284,018 - SGL_RS07875 0.35 -0.0
1,284,071 + SGL_RS07875 0.42 -0.5
1,284,095 + SGL_RS07875 0.45 -0.1
1,284,097 - SGL_RS07875 0.45 -0.6
1,284,185 - SGL_RS07875 0.56 -0.6
1,284,199 + SGL_RS07875 0.58 -0.3
1,284,214 + SGL_RS07875 0.60 +0.7
1,284,214 + SGL_RS07875 0.60 +0.3
1,284,266 - SGL_RS07875 0.67 +0.1
1,284,490 - +0.1

Or see this region's nucleotide sequence