Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07865 and SGL_RS07870 overlap by 4 nucleotides SGL_RS07870 and SGL_RS07875 are separated by 38 nucleotides SGL_RS07875 and SGL_RS07880 are separated by 133 nucleotides
SGL_RS07865: SGL_RS07865 - signal peptide peptidase SppA, at 1,281,361 to 1,283,193
_RS07865
SGL_RS07870: SGL_RS07870 - Ycf51 family protein, at 1,283,190 to 1,283,702
_RS07870
SGL_RS07875: SGL_RS07875 - alpha/beta hydrolase, at 1,283,741 to 1,284,526
_RS07875
SGL_RS07880: SGL_RS07880 - glutamyl-tRNA reductase, at 1,284,660 to 1,285,943
_RS07880
Position (kb)
1283
1284 Strain fitness (log2 ratio)
-2
-1
0
1 at 1282.493 kb on - strand, within SGL_RS07865 at 1282.596 kb on - strand, within SGL_RS07865 at 1282.630 kb on + strand, within SGL_RS07865 at 1282.975 kb on - strand, within SGL_RS07865 at 1283.006 kb on - strand, within SGL_RS07865 at 1283.012 kb on - strand at 1283.224 kb on + strand at 1283.301 kb on + strand, within SGL_RS07870 at 1283.302 kb on + strand, within SGL_RS07870 at 1283.320 kb on - strand, within SGL_RS07870 at 1283.538 kb on + strand, within SGL_RS07870 at 1283.539 kb on + strand, within SGL_RS07870 at 1283.547 kb on - strand, within SGL_RS07870 at 1283.762 kb on - strand at 1283.849 kb on + strand, within SGL_RS07875 at 1283.857 kb on + strand, within SGL_RS07875 at 1283.891 kb on - strand, within SGL_RS07875 at 1283.893 kb on + strand, within SGL_RS07875 at 1283.917 kb on + strand, within SGL_RS07875 at 1283.920 kb on - strand, within SGL_RS07875 at 1283.924 kb on + strand, within SGL_RS07875 at 1283.924 kb on + strand, within SGL_RS07875 at 1283.925 kb on - strand, within SGL_RS07875 at 1283.955 kb on + strand, within SGL_RS07875 at 1283.977 kb on - strand, within SGL_RS07875 at 1284.000 kb on + strand, within SGL_RS07875 at 1284.018 kb on - strand, within SGL_RS07875 at 1284.018 kb on - strand, within SGL_RS07875 at 1284.018 kb on - strand, within SGL_RS07875 at 1284.071 kb on + strand, within SGL_RS07875 at 1284.095 kb on + strand, within SGL_RS07875 at 1284.097 kb on - strand, within SGL_RS07875 at 1284.185 kb on - strand, within SGL_RS07875 at 1284.199 kb on + strand, within SGL_RS07875 at 1284.214 kb on + strand, within SGL_RS07875 at 1284.214 kb on + strand, within SGL_RS07875 at 1284.266 kb on - strand, within SGL_RS07875 at 1284.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,282,493 - SGL_RS07865 0.62 +0.0 1,282,596 - SGL_RS07865 0.67 -0.2 1,282,630 + SGL_RS07865 0.69 +0.0 1,282,975 - SGL_RS07865 0.88 +0.0 1,283,006 - SGL_RS07865 0.90 +1.0 1,283,012 - -0.3 1,283,224 + -0.1 1,283,301 + SGL_RS07870 0.22 -1.9 1,283,302 + SGL_RS07870 0.22 -1.8 1,283,320 - SGL_RS07870 0.25 -2.1 1,283,538 + SGL_RS07870 0.68 -0.6 1,283,539 + SGL_RS07870 0.68 +0.5 1,283,547 - SGL_RS07870 0.70 -2.3 1,283,762 - -0.2 1,283,849 + SGL_RS07875 0.14 +0.3 1,283,857 + SGL_RS07875 0.15 -0.1 1,283,891 - SGL_RS07875 0.19 -0.5 1,283,893 + SGL_RS07875 0.19 -0.3 1,283,917 + SGL_RS07875 0.22 +0.3 1,283,920 - SGL_RS07875 0.23 -0.0 1,283,924 + SGL_RS07875 0.23 -0.7 1,283,924 + SGL_RS07875 0.23 -0.2 1,283,925 - SGL_RS07875 0.23 -0.4 1,283,955 + SGL_RS07875 0.27 -0.0 1,283,977 - SGL_RS07875 0.30 -0.1 1,284,000 + SGL_RS07875 0.33 +0.0 1,284,018 - SGL_RS07875 0.35 -0.2 1,284,018 - SGL_RS07875 0.35 -0.2 1,284,018 - SGL_RS07875 0.35 -0.0 1,284,071 + SGL_RS07875 0.42 -0.5 1,284,095 + SGL_RS07875 0.45 -0.1 1,284,097 - SGL_RS07875 0.45 -0.6 1,284,185 - SGL_RS07875 0.56 -0.6 1,284,199 + SGL_RS07875 0.58 -0.3 1,284,214 + SGL_RS07875 0.60 +0.7 1,284,214 + SGL_RS07875 0.60 +0.3 1,284,266 - SGL_RS07875 0.67 +0.1 1,284,490 - +0.1
Or see this region's nucleotide sequence