Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07830 and SGL_RS07835 are separated by 90 nucleotides SGL_RS07835 and SGL_RS07840 are separated by 78 nucleotides SGL_RS07840 and SGL_RS07845 are separated by 125 nucleotides SGL_RS07845 and SGL_RS07850 are separated by 49 nucleotides
SGL_RS07830: SGL_RS07830 - DNA adenine methylase, at 1,274,352 to 1,275,281
_RS07830
SGL_RS07835: SGL_RS07835 - IS5 family transposase, at 1,275,372 to 1,276,157
_RS07835
SGL_RS07840: SGL_RS07840 - SDR family NAD(P)-dependent oxidoreductase, at 1,276,236 to 1,276,982
_RS07840
SGL_RS07845: SGL_RS07845 - DUF427 domain-containing protein, at 1,277,108 to 1,277,392
_RS07845
SGL_RS07850: SGL_RS07850 - response regulator transcription factor, at 1,277,442 to 1,278,074
_RS07850
Position (kb) 1276
1277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1275.874 kb on + strand, within SGL_RS07835 at 1276.602 kb on + strand, within SGL_RS07840 at 1276.609 kb on + strand, within SGL_RS07840 at 1276.619 kb on + strand, within SGL_RS07840 at 1276.627 kb on - strand, within SGL_RS07840 at 1276.801 kb on + strand, within SGL_RS07840 at 1276.934 kb on + strand at 1276.936 kb on - strand at 1276.942 kb on - strand at 1277.127 kb on - strand at 1277.168 kb on + strand, within SGL_RS07845 at 1277.169 kb on + strand, within SGL_RS07845 at 1277.181 kb on + strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.345 kb on - strand, within SGL_RS07845 at 1277.401 kb on - strand at 1277.402 kb on - strand at 1277.421 kb on + strand at 1277.422 kb on + strand at 1277.710 kb on - strand, within SGL_RS07850 at 1277.721 kb on - strand, within SGL_RS07850 at 1277.750 kb on + strand, within SGL_RS07850 at 1277.759 kb on - strand, within SGL_RS07850 at 1277.801 kb on - strand, within SGL_RS07850 at 1277.930 kb on + strand, within SGL_RS07850
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,275,874 + SGL_RS07835 0.64 +0.3 1,276,602 + SGL_RS07840 0.49 -3.6 1,276,609 + SGL_RS07840 0.50 -1.4 1,276,619 + SGL_RS07840 0.51 -1.9 1,276,627 - SGL_RS07840 0.52 -4.0 1,276,801 + SGL_RS07840 0.76 -4.7 1,276,934 + -3.9 1,276,936 - -1.9 1,276,942 - -3.1 1,277,127 - +0.1 1,277,168 + SGL_RS07845 0.21 +0.3 1,277,169 + SGL_RS07845 0.21 +0.0 1,277,181 + SGL_RS07845 0.26 +0.3 1,277,189 - SGL_RS07845 0.28 -0.2 1,277,189 - SGL_RS07845 0.28 +0.3 1,277,345 - SGL_RS07845 0.83 +0.2 1,277,401 - -0.7 1,277,402 - +0.7 1,277,421 + +0.1 1,277,422 + +0.9 1,277,710 - SGL_RS07850 0.42 +0.0 1,277,721 - SGL_RS07850 0.44 +0.1 1,277,750 + SGL_RS07850 0.49 -0.3 1,277,759 - SGL_RS07850 0.50 +0.3 1,277,801 - SGL_RS07850 0.57 +0.0 1,277,930 + SGL_RS07850 0.77 -0.3
Or see this region's nucleotide sequence