Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07550 and SGL_RS07555 are separated by 59 nucleotides SGL_RS07555 and SGL_RS07560 are separated by 137 nucleotides SGL_RS07560 and SGL_RS07565 are separated by 9 nucleotides SGL_RS07565 and SGL_RS19580 are separated by 45 nucleotides SGL_RS19580 and SGL_RS07570 are separated by 234 nucleotides
SGL_RS07550: SGL_RS07550 - AarF/ABC1/UbiB kinase family protein, at 1,220,473 to 1,222,230
_RS07550
SGL_RS07555: SGL_RS07555 - hypothetical protein, at 1,222,290 to 1,222,472
_RS07555
SGL_RS07560: SGL_RS07560 - thylakoid lumen protein, at 1,222,610 to 1,222,927
_RS07560
SGL_RS07565: SGL_RS07565 - hypothetical protein, at 1,222,937 to 1,223,209
_RS07565
SGL_RS19580: SGL_RS19580 - hypothetical protein, at 1,223,255 to 1,223,431
_RS19580
SGL_RS07570: SGL_RS07570 - ABC transporter permease, at 1,223,666 to 1,224,646
_RS07570
Position (kb) 1222
1223
1224 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1221.942 kb on + strand, within SGL_RS07550 at 1221.942 kb on + strand, within SGL_RS07550 at 1222.415 kb on + strand, within SGL_RS07555 at 1222.613 kb on + strand at 1222.644 kb on + strand, within SGL_RS07560 at 1222.652 kb on - strand, within SGL_RS07560 at 1222.679 kb on - strand, within SGL_RS07560 at 1222.774 kb on - strand, within SGL_RS07560 at 1222.853 kb on + strand, within SGL_RS07560 at 1222.863 kb on - strand, within SGL_RS07560 at 1222.885 kb on + strand, within SGL_RS07560 at 1222.986 kb on + strand, within SGL_RS07565 at 1223.023 kb on - strand, within SGL_RS07565 at 1223.040 kb on + strand, within SGL_RS07565 at 1223.048 kb on - strand, within SGL_RS07565 at 1223.114 kb on + strand, within SGL_RS07565 at 1223.122 kb on - strand, within SGL_RS07565 at 1223.122 kb on - strand, within SGL_RS07565 at 1223.132 kb on + strand, within SGL_RS07565 at 1223.158 kb on - strand, within SGL_RS07565 at 1223.243 kb on - strand at 1223.344 kb on + strand, within SGL_RS19580 at 1223.344 kb on + strand, within SGL_RS19580 at 1223.356 kb on - strand, within SGL_RS19580 at 1223.534 kb on - strand at 1223.549 kb on + strand at 1223.609 kb on + strand at 1223.943 kb on + strand, within SGL_RS07570
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 1,221,942 + SGL_RS07550 0.84 +0.4 1,221,942 + SGL_RS07550 0.84 -0.1 1,222,415 + SGL_RS07555 0.68 +0.1 1,222,613 + +0.4 1,222,644 + SGL_RS07560 0.11 +0.3 1,222,652 - SGL_RS07560 0.13 +0.1 1,222,679 - SGL_RS07560 0.22 +0.1 1,222,774 - SGL_RS07560 0.52 -0.0 1,222,853 + SGL_RS07560 0.76 +0.1 1,222,863 - SGL_RS07560 0.80 +0.0 1,222,885 + SGL_RS07560 0.86 +0.3 1,222,986 + SGL_RS07565 0.18 -0.2 1,223,023 - SGL_RS07565 0.32 -0.2 1,223,040 + SGL_RS07565 0.38 -3.2 1,223,048 - SGL_RS07565 0.41 -0.6 1,223,114 + SGL_RS07565 0.65 -4.0 1,223,122 - SGL_RS07565 0.68 -3.6 1,223,122 - SGL_RS07565 0.68 -3.7 1,223,132 + SGL_RS07565 0.71 -5.7 1,223,158 - SGL_RS07565 0.81 -5.9 1,223,243 - -0.3 1,223,344 + SGL_RS19580 0.50 +0.2 1,223,344 + SGL_RS19580 0.50 -0.2 1,223,356 - SGL_RS19580 0.57 -0.0 1,223,534 - -0.1 1,223,549 + +0.1 1,223,609 + +0.6 1,223,943 + SGL_RS07570 0.28 +0.1
Or see this region's nucleotide sequence