Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07130

Experiment: control for light_bubbling experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07125 and SGL_RS07130 are separated by 305 nucleotidesSGL_RS07130 and SGL_RS07135 are separated by 126 nucleotidesSGL_RS07135 and SGL_RS07140 are separated by 16 nucleotides SGL_RS07125: SGL_RS07125 - translocation/assembly module TamB domain-containing protein, at 1,124,071 to 1,130,007 _RS07125 SGL_RS07130: SGL_RS07130 - AAA-like domain-containing protein, at 1,130,313 to 1,131,683 _RS07130 SGL_RS07135: SGL_RS07135 - large conductance mechanosensitive channel protein MscL, at 1,131,810 to 1,132,247 _RS07135 SGL_RS07140: SGL_RS07140 - Holliday junction branch migration protein RuvA, at 1,132,264 to 1,132,899 _RS07140 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -1 0 1at 1129.427 kb on + strandat 1129.434 kb on - strandat 1129.435 kb on - strandat 1129.468 kb on + strandat 1129.580 kb on + strandat 1129.589 kb on - strandat 1129.796 kb on + strandat 1129.876 kb on - strandat 1129.887 kb on + strandat 1129.995 kb on + strandat 1130.058 kb on + strandat 1130.061 kb on - strandat 1130.062 kb on - strandat 1130.063 kb on + strandat 1130.692 kb on + strand, within SGL_RS07130at 1130.816 kb on - strand, within SGL_RS07130at 1131.024 kb on - strand, within SGL_RS07130at 1131.130 kb on - strand, within SGL_RS07130at 1131.222 kb on + strand, within SGL_RS07130at 1131.246 kb on - strand, within SGL_RS07130at 1131.301 kb on + strand, within SGL_RS07130at 1131.398 kb on + strand, within SGL_RS07130at 1131.406 kb on - strand, within SGL_RS07130at 1131.434 kb on + strand, within SGL_RS07130at 1131.611 kb on + strandat 1131.978 kb on + strand, within SGL_RS07135at 1131.986 kb on - strand, within SGL_RS07135at 1131.986 kb on - strand, within SGL_RS07135at 1132.147 kb on + strand, within SGL_RS07135

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Per-strain Table

Position Strand Gene LocusTag Fraction control for light_bubbling experiments
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1,129,427 + -1.1
1,129,434 - +0.1
1,129,435 - -0.5
1,129,468 + +0.4
1,129,580 + -0.6
1,129,589 - -0.1
1,129,796 + -0.3
1,129,876 - +0.1
1,129,887 + -0.1
1,129,995 + -0.2
1,130,058 + +0.1
1,130,061 - -0.1
1,130,062 - +0.1
1,130,063 + +0.3
1,130,692 + SGL_RS07130 0.28 -0.8
1,130,816 - SGL_RS07130 0.37 -1.3
1,131,024 - SGL_RS07130 0.52 -0.8
1,131,130 - SGL_RS07130 0.60 -0.8
1,131,222 + SGL_RS07130 0.66 -1.4
1,131,246 - SGL_RS07130 0.68 -0.9
1,131,301 + SGL_RS07130 0.72 -1.0
1,131,398 + SGL_RS07130 0.79 -0.9
1,131,406 - SGL_RS07130 0.80 -0.8
1,131,434 + SGL_RS07130 0.82 -0.7
1,131,611 + -1.2
1,131,978 + SGL_RS07135 0.38 -0.6
1,131,986 - SGL_RS07135 0.40 -0.3
1,131,986 - SGL_RS07135 0.40 -0.4
1,132,147 + SGL_RS07135 0.77 -0.2

Or see this region's nucleotide sequence