Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05395 and SGL_RS05400 are separated by 142 nucleotides SGL_RS05400 and SGL_RS05405 are separated by 555 nucleotides
SGL_RS05395: SGL_RS05395 - DUF58 domain-containing protein, at 753,427 to 754,734
_RS05395
SGL_RS05400: SGL_RS05400 - Crp/Fnr family transcriptional regulator, at 754,877 to 755,497
_RS05400
SGL_RS05405: SGL_RS05405 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 756,053 to 757,195
_RS05405
Position (kb) 754
755
756 Strain fitness (log2 ratio) -1
0
1 at 753.883 kb on - strand, within SGL_RS05395 at 753.965 kb on + strand, within SGL_RS05395 at 753.965 kb on + strand, within SGL_RS05395 at 753.973 kb on - strand, within SGL_RS05395 at 754.401 kb on + strand, within SGL_RS05395 at 754.412 kb on + strand, within SGL_RS05395 at 754.556 kb on - strand, within SGL_RS05395 at 754.562 kb on - strand, within SGL_RS05395 at 754.563 kb on + strand, within SGL_RS05395 at 754.600 kb on - strand, within SGL_RS05395 at 754.626 kb on + strand at 754.736 kb on - strand at 754.810 kb on - strand at 755.149 kb on - strand, within SGL_RS05400 at 755.273 kb on - strand, within SGL_RS05400 at 755.790 kb on - strand at 755.969 kb on + strand at 756.186 kb on + strand, within SGL_RS05405 at 756.194 kb on - strand, within SGL_RS05405 at 756.198 kb on + strand, within SGL_RS05405 at 756.324 kb on + strand, within SGL_RS05405 at 756.386 kb on - strand, within SGL_RS05405 at 756.415 kb on - strand, within SGL_RS05405
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 753,883 - SGL_RS05395 0.35 -0.6 753,965 + SGL_RS05395 0.41 +0.1 753,965 + SGL_RS05395 0.41 +0.1 753,973 - SGL_RS05395 0.42 +0.4 754,401 + SGL_RS05395 0.74 +0.1 754,412 + SGL_RS05395 0.75 +0.0 754,556 - SGL_RS05395 0.86 -0.2 754,562 - SGL_RS05395 0.87 +0.6 754,563 + SGL_RS05395 0.87 +0.1 754,600 - SGL_RS05395 0.90 -0.2 754,626 + +0.0 754,736 - -0.3 754,810 - +0.0 755,149 - SGL_RS05400 0.44 -0.8 755,273 - SGL_RS05400 0.64 -1.2 755,790 - +0.4 755,969 + -0.1 756,186 + SGL_RS05405 0.12 +0.1 756,194 - SGL_RS05405 0.12 +0.0 756,198 + SGL_RS05405 0.13 -0.1 756,324 + SGL_RS05405 0.24 +0.7 756,386 - SGL_RS05405 0.29 +0.1 756,415 - SGL_RS05405 0.32 -0.1
Or see this region's nucleotide sequence