Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04815 and SGL_RS04820 are separated by 50 nucleotides SGL_RS04820 and SGL_RS04825 are separated by 303 nucleotides SGL_RS04825 and SGL_RS04830 are separated by 119 nucleotides
SGL_RS04815: SGL_RS04815 - hypothetical protein, at 629,398 to 630,504
_RS04815
SGL_RS04820: SGL_RS04820 - LysR family transcriptional regulator, at 630,555 to 631,592
_RS04820
SGL_RS04825: SGL_RS04825 - hypothetical protein, at 631,896 to 632,093
_RS04825
SGL_RS04830: SGL_RS04830 - PhzF family phenazine biosynthesis protein, at 632,213 to 633,157
_RS04830
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 629.681 kb on - strand, within SGL_RS04815 at 630.053 kb on + strand, within SGL_RS04815 at 630.292 kb on + strand, within SGL_RS04815 at 630.538 kb on + strand at 630.670 kb on - strand, within SGL_RS04820 at 630.741 kb on - strand, within SGL_RS04820 at 631.440 kb on + strand, within SGL_RS04820 at 631.659 kb on - strand at 631.869 kb on + strand at 631.917 kb on - strand, within SGL_RS04825 at 631.928 kb on - strand, within SGL_RS04825 at 632.066 kb on - strand, within SGL_RS04825 at 632.095 kb on + strand at 632.102 kb on - strand at 632.111 kb on - strand at 632.221 kb on - strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.464 kb on + strand, within SGL_RS04830 at 632.521 kb on - strand, within SGL_RS04830 at 632.570 kb on - strand, within SGL_RS04830
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 629,681 - SGL_RS04815 0.26 +0.4 630,053 + SGL_RS04815 0.59 +0.3 630,292 + SGL_RS04815 0.81 +0.2 630,538 + +0.3 630,670 - SGL_RS04820 0.11 -1.3 630,741 - SGL_RS04820 0.18 +0.2 631,440 + SGL_RS04820 0.85 -2.5 631,659 - +0.2 631,869 + -0.0 631,917 - SGL_RS04825 0.11 -0.1 631,928 - SGL_RS04825 0.16 +0.4 632,066 - SGL_RS04825 0.86 +0.5 632,095 + -0.8 632,102 - -0.0 632,111 - +0.1 632,221 - +0.1 632,242 - -0.2 632,242 - +0.4 632,464 + SGL_RS04830 0.27 +0.4 632,521 - SGL_RS04830 0.33 +0.1 632,570 - SGL_RS04830 0.38 +0.1
Or see this region's nucleotide sequence