Experiment: control for light_bubbling experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03540 and SGL_RS03545 overlap by 4 nucleotides SGL_RS03545 and SGL_RS03550 are separated by 0 nucleotides
SGL_RS03540: SGL_RS03540 - ABC transporter ATP-binding protein, at 352,263 to 353,555
_RS03540
SGL_RS03545: SGL_RS03545 - glucose-1-phosphate cytidylyltransferase, at 353,552 to 354,322
_RS03545
SGL_RS03550: SGL_RS03550 - CDP-glucose 4,6-dehydratase, at 354,323 to 355,405
_RS03550
Position (kb) 353
354
355 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 352.659 kb on + strand, within SGL_RS03540 at 352.670 kb on + strand, within SGL_RS03540 at 353.059 kb on + strand, within SGL_RS03540 at 353.061 kb on + strand, within SGL_RS03540 at 353.481 kb on + strand at 353.486 kb on + strand at 353.820 kb on - strand, within SGL_RS03545 at 354.014 kb on + strand, within SGL_RS03545 at 354.213 kb on - strand, within SGL_RS03545 at 354.409 kb on - strand at 354.459 kb on + strand, within SGL_RS03550 at 354.468 kb on - strand, within SGL_RS03550 at 354.504 kb on + strand, within SGL_RS03550 at 354.590 kb on + strand, within SGL_RS03550 at 354.602 kb on - strand, within SGL_RS03550 at 354.614 kb on - strand, within SGL_RS03550 at 354.615 kb on + strand, within SGL_RS03550 at 354.667 kb on - strand, within SGL_RS03550 at 354.760 kb on + strand, within SGL_RS03550 at 354.790 kb on + strand, within SGL_RS03550 at 354.869 kb on + strand, within SGL_RS03550 at 354.877 kb on - strand, within SGL_RS03550 at 355.078 kb on - strand, within SGL_RS03550 at 355.092 kb on - strand, within SGL_RS03550 at 355.217 kb on + strand, within SGL_RS03550 at 355.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction control for light_bubbling experiments remove 352,659 + SGL_RS03540 0.31 -6.1 352,670 + SGL_RS03540 0.31 -5.1 353,059 + SGL_RS03540 0.62 -4.1 353,061 + SGL_RS03540 0.62 -4.0 353,481 + -2.9 353,486 + -3.3 353,820 - SGL_RS03545 0.35 -1.4 354,014 + SGL_RS03545 0.60 -1.6 354,213 - SGL_RS03545 0.86 -2.0 354,409 - -2.9 354,459 + SGL_RS03550 0.13 -3.9 354,468 - SGL_RS03550 0.13 -3.5 354,504 + SGL_RS03550 0.17 -2.5 354,590 + SGL_RS03550 0.25 -0.7 354,602 - SGL_RS03550 0.26 -3.0 354,614 - SGL_RS03550 0.27 -2.7 354,615 + SGL_RS03550 0.27 -3.5 354,667 - SGL_RS03550 0.32 -3.5 354,760 + SGL_RS03550 0.40 -3.6 354,790 + SGL_RS03550 0.43 -3.3 354,869 + SGL_RS03550 0.50 -3.2 354,877 - SGL_RS03550 0.51 -2.7 355,078 - SGL_RS03550 0.70 -4.4 355,092 - SGL_RS03550 0.71 -4.8 355,217 + SGL_RS03550 0.83 -3.8 355,308 + -3.2
Or see this region's nucleotide sequence