Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18875

Experiment: Ethanol 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10015 and SGL_RS10020 are separated by 26 nucleotidesSGL_RS10020 and SGL_RS18875 are separated by 252 nucleotidesSGL_RS18875 and SGL_RS19880 overlap by 91 nucleotidesSGL_RS19880 and SGL_RS10035 are separated by 418 nucleotides SGL_RS10015: SGL_RS10015 - calcium/proton exchanger, at 1,723,452 to 1,724,570 _RS10015 SGL_RS10020: SGL_RS10020 - dCTP deaminase, at 1,724,597 to 1,725,178 _RS10020 SGL_RS18875: SGL_RS18875 - IS630 family transposase, at 1,725,431 to 1,726,009 _RS18875 SGL_RS19880: SGL_RS19880 - IS630 transposase-related protein, at 1,725,919 to 1,726,278 _RS19880 SGL_RS10035: SGL_RS10035 - VWA domain-containing protein, at 1,726,697 to 1,727,299 _RS10035 Position (kb) 1725 1726 1727Strain fitness (log2 ratio) -1 0 1at 1724.481 kb on - strandat 1724.502 kb on - strandat 1724.595 kb on + strandat 1725.257 kb on + strandat 1726.899 kb on - strand, within SGL_RS10035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
remove
1,724,481 - -0.2
1,724,502 - -0.1
1,724,595 + +0.3
1,725,257 + +0.1
1,726,899 - SGL_RS10035 0.33 +0.4

Or see this region's nucleotide sequence