Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18165 and SGL_RS18170 are separated by 17 nucleotides SGL_RS18170 and SGL_RS18175 are separated by 35 nucleotides SGL_RS18175 and SGL_RS18180 are separated by 7 nucleotides
SGL_RS18165: SGL_RS18165 - hypothetical protein, at 3,528,265 to 3,529,305
_RS18165
SGL_RS18170: SGL_RS18170 - PspA/IM30 family protein, at 3,529,323 to 3,529,994
_RS18170
SGL_RS18175: SGL_RS18175 - homocysteine S-methyltransferase family protein, at 3,530,030 to 3,530,971
_RS18175
SGL_RS18180: SGL_RS18180 - ABC transporter permease, at 3,530,979 to 3,531,755
_RS18180
Position (kb)
3529
3530 Strain fitness (log2 ratio)
-2
-1
0
1 at 3528.356 kb on + strand at 3528.368 kb on + strand at 3528.376 kb on - strand, within SGL_RS18165 at 3528.398 kb on + strand, within SGL_RS18165 at 3528.398 kb on + strand, within SGL_RS18165 at 3528.499 kb on + strand, within SGL_RS18165 at 3528.671 kb on + strand, within SGL_RS18165 at 3528.671 kb on + strand, within SGL_RS18165 at 3528.719 kb on - strand, within SGL_RS18165 at 3528.820 kb on + strand, within SGL_RS18165 at 3528.823 kb on - strand, within SGL_RS18165 at 3528.885 kb on + strand, within SGL_RS18165 at 3528.970 kb on - strand, within SGL_RS18165 at 3529.046 kb on - strand, within SGL_RS18165 at 3529.055 kb on + strand, within SGL_RS18165 at 3529.062 kb on + strand, within SGL_RS18165 at 3529.065 kb on - strand, within SGL_RS18165 at 3529.074 kb on + strand, within SGL_RS18165 at 3529.283 kb on + strand at 3529.291 kb on - strand at 3529.297 kb on + strand at 3529.313 kb on - strand at 3529.458 kb on + strand, within SGL_RS18170 at 3529.634 kb on + strand, within SGL_RS18170 at 3529.664 kb on + strand, within SGL_RS18170 at 3530.136 kb on + strand, within SGL_RS18175 at 3530.361 kb on + strand, within SGL_RS18175 at 3530.384 kb on + strand, within SGL_RS18175 at 3530.400 kb on + strand, within SGL_RS18175 at 3530.452 kb on - strand, within SGL_RS18175 at 3530.493 kb on - strand, within SGL_RS18175 at 3530.622 kb on - strand, within SGL_RS18175
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 3,528,356 + +0.5 3,528,368 + +0.6 3,528,376 - SGL_RS18165 0.11 +1.0 3,528,398 + SGL_RS18165 0.13 +0.3 3,528,398 + SGL_RS18165 0.13 +0.4 3,528,499 + SGL_RS18165 0.22 +0.4 3,528,671 + SGL_RS18165 0.39 +0.3 3,528,671 + SGL_RS18165 0.39 +0.5 3,528,719 - SGL_RS18165 0.44 +1.0 3,528,820 + SGL_RS18165 0.53 +0.8 3,528,823 - SGL_RS18165 0.54 +0.7 3,528,885 + SGL_RS18165 0.60 +0.4 3,528,970 - SGL_RS18165 0.68 +0.5 3,529,046 - SGL_RS18165 0.75 +0.5 3,529,055 + SGL_RS18165 0.76 +0.6 3,529,062 + SGL_RS18165 0.77 -0.3 3,529,065 - SGL_RS18165 0.77 +0.4 3,529,074 + SGL_RS18165 0.78 +0.3 3,529,283 + -0.1 3,529,291 - +0.2 3,529,297 + -0.8 3,529,313 - -0.3 3,529,458 + SGL_RS18170 0.20 -1.1 3,529,634 + SGL_RS18170 0.46 -1.5 3,529,664 + SGL_RS18170 0.51 -2.7 3,530,136 + SGL_RS18175 0.11 -0.1 3,530,361 + SGL_RS18175 0.35 +0.3 3,530,384 + SGL_RS18175 0.38 -0.8 3,530,400 + SGL_RS18175 0.39 -0.1 3,530,452 - SGL_RS18175 0.45 -0.3 3,530,493 - SGL_RS18175 0.49 +1.1 3,530,622 - SGL_RS18175 0.63 -0.0
Or see this region's nucleotide sequence