Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17645 and SGL_RS17650 are separated by 165 nucleotides SGL_RS17650 and SGL_RS17655 are separated by 538 nucleotides
SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667
_RS17645
SGL_RS17650: SGL_RS17650 - hypothetical protein, at 3,414,833 to 3,415,525
_RS17650
SGL_RS17655: SGL_RS17655 - ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein, at 3,416,064 to 3,416,924
_RS17655
Position (kb)
3414
3415
3416 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3413.916 kb on + strand, within SGL_RS17645 at 3414.052 kb on - strand, within SGL_RS17645 at 3414.075 kb on + strand, within SGL_RS17645 at 3414.485 kb on + strand, within SGL_RS17645 at 3414.631 kb on - strand at 3414.662 kb on + strand at 3414.664 kb on + strand at 3414.797 kb on + strand at 3414.803 kb on - strand at 3414.814 kb on + strand at 3414.838 kb on + strand at 3414.902 kb on + strand at 3414.910 kb on - strand, within SGL_RS17650 at 3415.045 kb on + strand, within SGL_RS17650 at 3415.093 kb on + strand, within SGL_RS17650 at 3415.257 kb on + strand, within SGL_RS17650 at 3415.424 kb on + strand, within SGL_RS17650 at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.191 kb on + strand, within SGL_RS17655 at 3416.191 kb on + strand, within SGL_RS17655 at 3416.199 kb on - strand, within SGL_RS17655 at 3416.199 kb on - strand, within SGL_RS17655 at 3416.264 kb on + strand, within SGL_RS17655 at 3416.454 kb on + strand, within SGL_RS17655 at 3416.474 kb on - strand, within SGL_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 3,413,916 + SGL_RS17645 0.53 -0.7 3,414,052 - SGL_RS17645 0.61 -0.1 3,414,075 + SGL_RS17645 0.63 -1.1 3,414,485 + SGL_RS17645 0.88 -0.4 3,414,631 - -0.0 3,414,662 + -0.2 3,414,664 + -0.0 3,414,797 + +0.2 3,414,803 - +0.3 3,414,814 + +0.1 3,414,838 + +0.0 3,414,902 + -2.6 3,414,910 - SGL_RS17650 0.11 -3.6 3,415,045 + SGL_RS17650 0.31 -3.4 3,415,093 + SGL_RS17650 0.38 -3.5 3,415,257 + SGL_RS17650 0.61 -3.7 3,415,424 + SGL_RS17650 0.85 -3.7 3,416,017 + +0.1 3,416,017 + +0.7 3,416,017 + +0.6 3,416,017 + -0.1 3,416,191 + SGL_RS17655 0.15 -0.5 3,416,191 + SGL_RS17655 0.15 -0.1 3,416,199 - SGL_RS17655 0.16 -0.0 3,416,199 - SGL_RS17655 0.16 +0.1 3,416,264 + SGL_RS17655 0.23 -0.2 3,416,454 + SGL_RS17655 0.45 +0.2 3,416,474 - SGL_RS17655 0.48 -0.6
Or see this region's nucleotide sequence