Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16940

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16930 and SGL_RS16935 are separated by 84 nucleotidesSGL_RS16935 and SGL_RS16940 are separated by 82 nucleotidesSGL_RS16940 and SGL_RS16945 are separated by 184 nucleotides SGL_RS16930: SGL_RS16930 - ribonuclease J, at 3,250,985 to 3,252,907 _RS16930 SGL_RS16935: SGL_RS16935 - hypothetical protein, at 3,252,992 to 3,253,726 _RS16935 SGL_RS16940: SGL_RS16940 - dephospho-CoA kinase, at 3,253,809 to 3,254,414 _RS16940 SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670 _RS16945 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -3 -2 -1 0 1at 3252.824 kb on + strandat 3253.222 kb on - strand, within SGL_RS16935at 3253.611 kb on + strand, within SGL_RS16935at 3253.747 kb on + strandat 3254.098 kb on + strand, within SGL_RS16940at 3254.276 kb on - strand, within SGL_RS16940at 3254.346 kb on + strand, within SGL_RS16940at 3254.346 kb on + strand, within SGL_RS16940at 3254.648 kb on - strandat 3255.411 kb on - strand, within SGL_RS16945

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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3,252,824 + -3.5
3,253,222 - SGL_RS16935 0.31 -0.0
3,253,611 + SGL_RS16935 0.84 +0.3
3,253,747 + +0.1
3,254,098 + SGL_RS16940 0.48 -1.8
3,254,276 - SGL_RS16940 0.77 -0.8
3,254,346 + SGL_RS16940 0.89 -1.3
3,254,346 + SGL_RS16940 0.89 -2.1
3,254,648 - +0.1
3,255,411 - SGL_RS16945 0.26 -0.0

Or see this region's nucleotide sequence