Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15800 and SGL_RS15805 are separated by 190 nucleotides SGL_RS15805 and SGL_RS15810 are separated by 61 nucleotides
SGL_RS15800: SGL_RS15800 - PP2C family protein-serine/threonine phosphatase, at 2,994,188 to 2,995,717
_RS15800
SGL_RS15805: SGL_RS15805 - two component system response regulator RpaA, at 2,995,908 to 2,996,633
_RS15805
SGL_RS15810: SGL_RS15810 - phycocyanobilin:ferredoxin oxidoreductase, at 2,996,695 to 2,997,441
_RS15810
Position (kb)
2995
2996
2997 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2995.125 kb on - strand, within SGL_RS15800 at 2995.277 kb on - strand, within SGL_RS15800 at 2995.296 kb on + strand, within SGL_RS15800 at 2995.304 kb on - strand, within SGL_RS15800 at 2995.524 kb on - strand, within SGL_RS15800 at 2995.838 kb on - strand at 2995.840 kb on - strand at 2995.912 kb on + strand at 2995.989 kb on + strand, within SGL_RS15805 at 2996.016 kb on + strand, within SGL_RS15805 at 2996.125 kb on + strand, within SGL_RS15805 at 2996.274 kb on + strand, within SGL_RS15805 at 2996.323 kb on + strand, within SGL_RS15805 at 2996.330 kb on - strand, within SGL_RS15805 at 2996.463 kb on + strand, within SGL_RS15805 at 2996.471 kb on - strand, within SGL_RS15805 at 2996.571 kb on + strand at 2996.581 kb on - strand at 2996.618 kb on + strand at 2996.662 kb on - strand at 2996.845 kb on - strand, within SGL_RS15810 at 2996.976 kb on + strand, within SGL_RS15810 at 2997.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,995,125 - SGL_RS15800 0.61 +0.4 2,995,277 - SGL_RS15800 0.71 +0.2 2,995,296 + SGL_RS15800 0.72 -0.2 2,995,304 - SGL_RS15800 0.73 -0.1 2,995,524 - SGL_RS15800 0.87 +0.3 2,995,838 - +0.1 2,995,840 - +0.1 2,995,912 + -1.3 2,995,989 + SGL_RS15805 0.11 -0.7 2,996,016 + SGL_RS15805 0.15 -1.2 2,996,125 + SGL_RS15805 0.30 -0.7 2,996,274 + SGL_RS15805 0.50 -0.1 2,996,323 + SGL_RS15805 0.57 -0.9 2,996,330 - SGL_RS15805 0.58 -1.4 2,996,463 + SGL_RS15805 0.76 -1.4 2,996,471 - SGL_RS15805 0.78 -2.8 2,996,571 + -1.2 2,996,581 - -1.5 2,996,618 + +0.2 2,996,662 - +0.3 2,996,845 - SGL_RS15810 0.20 -0.9 2,996,976 + SGL_RS15810 0.38 -3.1 2,997,626 - +0.1
Or see this region's nucleotide sequence