Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15285 and SGL_RS15290 are separated by 216 nucleotides SGL_RS15290 and SGL_RS15295 are separated by 222 nucleotides SGL_RS15295 and SGL_RS15300 are separated by 100 nucleotides SGL_RS15300 and SGL_RS15305 are separated by 80 nucleotides
SGL_RS15285: SGL_RS15285 - D-sedoheptulose 7-phosphate isomerase, at 2,879,965 to 2,880,549
_RS15285
SGL_RS15290: SGL_RS15290 - 6-carboxytetrahydropterin synthase QueD, at 2,880,766 to 2,881,155
_RS15290
SGL_RS15295: SGL_RS15295 - GspE/PulE family protein, at 2,881,378 to 2,883,819
_RS15295
SGL_RS15300: SGL_RS15300 - hypothetical protein, at 2,883,920 to 2,884,276
_RS15300
SGL_RS15305: SGL_RS15305 - ribonuclease HI, at 2,884,357 to 2,884,839
_RS15305
Position (kb)
2881
2882
2883
2884 Strain fitness (log2 ratio)
-2
-1
0
1 at 2880.731 kb on + strand at 2880.746 kb on - strand at 2880.802 kb on + strand at 2880.934 kb on - strand, within SGL_RS15290 at 2880.980 kb on + strand, within SGL_RS15290 at 2880.998 kb on - strand, within SGL_RS15290 at 2881.011 kb on - strand, within SGL_RS15290 at 2881.044 kb on - strand, within SGL_RS15290 at 2881.103 kb on + strand, within SGL_RS15290 at 2881.337 kb on - strand at 2881.337 kb on - strand at 2881.345 kb on - strand at 2881.383 kb on - strand at 2881.652 kb on + strand, within SGL_RS15295 at 2881.652 kb on - strand, within SGL_RS15295 at 2881.652 kb on - strand, within SGL_RS15295 at 2881.712 kb on + strand, within SGL_RS15295 at 2881.721 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.831 kb on - strand, within SGL_RS15295 at 2881.838 kb on + strand, within SGL_RS15295 at 2882.028 kb on - strand, within SGL_RS15295 at 2882.094 kb on + strand, within SGL_RS15295 at 2882.149 kb on - strand, within SGL_RS15295 at 2882.187 kb on + strand, within SGL_RS15295 at 2882.210 kb on - strand, within SGL_RS15295 at 2882.226 kb on + strand, within SGL_RS15295 at 2882.253 kb on - strand, within SGL_RS15295 at 2882.299 kb on + strand, within SGL_RS15295 at 2882.437 kb on - strand, within SGL_RS15295 at 2882.522 kb on + strand, within SGL_RS15295 at 2882.865 kb on - strand, within SGL_RS15295 at 2882.966 kb on + strand, within SGL_RS15295 at 2883.005 kb on + strand, within SGL_RS15295 at 2883.029 kb on + strand, within SGL_RS15295 at 2883.037 kb on - strand, within SGL_RS15295 at 2883.078 kb on + strand, within SGL_RS15295 at 2883.080 kb on + strand, within SGL_RS15295 at 2883.134 kb on + strand, within SGL_RS15295 at 2883.150 kb on - strand, within SGL_RS15295 at 2883.156 kb on - strand, within SGL_RS15295 at 2883.237 kb on - strand, within SGL_RS15295 at 2883.584 kb on + strand at 2883.637 kb on - strand at 2883.641 kb on + strand at 2883.720 kb on + strand at 2883.810 kb on - strand at 2884.095 kb on - strand, within SGL_RS15300 at 2884.136 kb on - strand, within SGL_RS15300 at 2884.313 kb on - strand at 2884.313 kb on - strand at 2884.333 kb on + strand at 2884.334 kb on + strand at 2884.341 kb on - strand at 2884.383 kb on + strand at 2884.401 kb on - strand at 2884.420 kb on - strand, within SGL_RS15305 at 2884.459 kb on - strand, within SGL_RS15305 at 2884.701 kb on + strand, within SGL_RS15305 at 2884.731 kb on + strand, within SGL_RS15305
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,880,731 + -0.3 2,880,746 - +0.5 2,880,802 + +0.1 2,880,934 - SGL_RS15290 0.43 -0.8 2,880,980 + SGL_RS15290 0.55 +0.4 2,880,998 - SGL_RS15290 0.59 +0.3 2,881,011 - SGL_RS15290 0.63 +0.0 2,881,044 - SGL_RS15290 0.71 -0.1 2,881,103 + SGL_RS15290 0.86 +0.3 2,881,337 - -1.1 2,881,337 - -1.3 2,881,345 - -1.2 2,881,383 - -1.1 2,881,652 + SGL_RS15295 0.11 -1.1 2,881,652 - SGL_RS15295 0.11 -0.9 2,881,652 - SGL_RS15295 0.11 -0.8 2,881,712 + SGL_RS15295 0.14 -2.1 2,881,721 - SGL_RS15295 0.14 -1.2 2,881,831 - SGL_RS15295 0.19 -1.1 2,881,831 - SGL_RS15295 0.19 -1.0 2,881,831 - SGL_RS15295 0.19 -0.6 2,881,838 + SGL_RS15295 0.19 -1.3 2,882,028 - SGL_RS15295 0.27 -0.8 2,882,094 + SGL_RS15295 0.29 -1.3 2,882,149 - SGL_RS15295 0.32 -0.7 2,882,187 + SGL_RS15295 0.33 -0.6 2,882,210 - SGL_RS15295 0.34 -2.1 2,882,226 + SGL_RS15295 0.35 -1.5 2,882,253 - SGL_RS15295 0.36 -1.2 2,882,299 + SGL_RS15295 0.38 -1.1 2,882,437 - SGL_RS15295 0.43 -1.4 2,882,522 + SGL_RS15295 0.47 -1.0 2,882,865 - SGL_RS15295 0.61 -1.1 2,882,966 + SGL_RS15295 0.65 -0.8 2,883,005 + SGL_RS15295 0.67 -1.0 2,883,029 + SGL_RS15295 0.68 -0.6 2,883,037 - SGL_RS15295 0.68 -1.6 2,883,078 + SGL_RS15295 0.70 -1.0 2,883,080 + SGL_RS15295 0.70 -1.4 2,883,134 + SGL_RS15295 0.72 -1.2 2,883,150 - SGL_RS15295 0.73 -1.0 2,883,156 - SGL_RS15295 0.73 -0.8 2,883,237 - SGL_RS15295 0.76 -0.7 2,883,584 + +0.2 2,883,637 - -1.0 2,883,641 + -0.4 2,883,720 + -0.1 2,883,810 - -1.0 2,884,095 - SGL_RS15300 0.49 +0.0 2,884,136 - SGL_RS15300 0.61 +0.3 2,884,313 - -0.5 2,884,313 - -0.3 2,884,333 + -0.2 2,884,334 + -0.2 2,884,341 - -0.2 2,884,383 + -0.1 2,884,401 - -0.6 2,884,420 - SGL_RS15305 0.13 -0.8 2,884,459 - SGL_RS15305 0.21 -0.8 2,884,701 + SGL_RS15305 0.71 -1.0 2,884,731 + SGL_RS15305 0.77 -1.0
Or see this region's nucleotide sequence