Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14640

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14635 and SGL_RS14640 are separated by 137 nucleotidesSGL_RS14640 and SGL_RS14645 are separated by 159 nucleotidesSGL_RS14645 and SGL_RS14650 are separated by 2 nucleotidesSGL_RS14650 and SGL_RS14655 are separated by 15 nucleotides SGL_RS14635: SGL_RS14635 - ABC transporter ATP-binding protein/permease, at 2,735,806 to 2,737,791 _RS14635 SGL_RS14640: SGL_RS14640 - hypothetical protein, at 2,737,929 to 2,738,552 _RS14640 SGL_RS14645: SGL_RS14645 - type II toxin-antitoxin system HicB family antitoxin, at 2,738,712 to 2,738,915 _RS14645 SGL_RS14650: SGL_RS14650 - type II toxin-antitoxin system HicA family toxin, at 2,738,918 to 2,739,133 _RS14650 SGL_RS14655: SGL_RS14655 - efflux RND transporter periplasmic adaptor subunit, at 2,739,149 to 2,740,654 _RS14655 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -1 0 1at 2736.958 kb on + strand, within SGL_RS14635at 2736.958 kb on + strand, within SGL_RS14635at 2737.336 kb on + strand, within SGL_RS14635at 2737.471 kb on + strand, within SGL_RS14635at 2737.553 kb on + strand, within SGL_RS14635at 2737.561 kb on - strand, within SGL_RS14635at 2737.600 kb on + strandat 2738.339 kb on + strand, within SGL_RS14640at 2739.022 kb on - strand, within SGL_RS14650at 2739.022 kb on - strand, within SGL_RS14650at 2739.187 kb on - strandat 2739.351 kb on + strand, within SGL_RS14655at 2739.351 kb on + strand, within SGL_RS14655at 2739.354 kb on - strand, within SGL_RS14655

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,736,958 + SGL_RS14635 0.58 -0.6
2,736,958 + SGL_RS14635 0.58 +0.2
2,737,336 + SGL_RS14635 0.77 +0.3
2,737,471 + SGL_RS14635 0.84 -0.0
2,737,553 + SGL_RS14635 0.88 -0.3
2,737,561 - SGL_RS14635 0.88 +0.1
2,737,600 + +0.3
2,738,339 + SGL_RS14640 0.66 -0.9
2,739,022 - SGL_RS14650 0.48 +0.0
2,739,022 - SGL_RS14650 0.48 +0.4
2,739,187 - +0.2
2,739,351 + SGL_RS14655 0.13 +0.8
2,739,351 + SGL_RS14655 0.13 +0.9
2,739,354 - SGL_RS14655 0.14 +0.2

Or see this region's nucleotide sequence