Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14390

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14380 and SGL_RS14385 are separated by 4 nucleotidesSGL_RS14385 and SGL_RS14390 are separated by 216 nucleotidesSGL_RS14390 and SGL_RS14395 are separated by 116 nucleotidesSGL_RS14395 and SGL_RS14400 are separated by 197 nucleotides SGL_RS14380: SGL_RS14380 - DUF1361 domain-containing protein, at 2,681,894 to 2,682,547 _RS14380 SGL_RS14385: SGL_RS14385 - response regulator transcription factor, at 2,682,552 to 2,683,226 _RS14385 SGL_RS14390: SGL_RS14390 - histidine phosphatase family protein, at 2,683,443 to 2,684,081 _RS14390 SGL_RS14395: SGL_RS14395 - hypothetical protein, at 2,684,198 to 2,684,824 _RS14395 SGL_RS14400: SGL_RS14400 - cation:proton antiporter, at 2,685,022 to 2,687,055 _RS14400 Position (kb) 2683 2684 2685Strain fitness (log2 ratio) -1 0 1 2at 2682.509 kb on - strandat 2682.584 kb on - strandat 2682.594 kb on - strandat 2682.645 kb on - strand, within SGL_RS14385at 2682.690 kb on - strand, within SGL_RS14385at 2682.690 kb on - strand, within SGL_RS14385at 2682.711 kb on + strand, within SGL_RS14385at 2682.907 kb on + strand, within SGL_RS14385at 2682.924 kb on - strand, within SGL_RS14385at 2683.045 kb on - strand, within SGL_RS14385at 2683.063 kb on + strand, within SGL_RS14385at 2683.071 kb on - strand, within SGL_RS14385at 2683.134 kb on - strand, within SGL_RS14385at 2683.134 kb on - strand, within SGL_RS14385at 2683.136 kb on + strand, within SGL_RS14385at 2683.136 kb on + strand, within SGL_RS14385at 2683.646 kb on + strand, within SGL_RS14390at 2683.653 kb on - strand, within SGL_RS14390at 2683.751 kb on + strand, within SGL_RS14390at 2683.908 kb on + strand, within SGL_RS14390at 2683.916 kb on - strand, within SGL_RS14390at 2683.933 kb on + strand, within SGL_RS14390at 2684.171 kb on + strandat 2684.364 kb on - strand, within SGL_RS14395at 2684.457 kb on - strand, within SGL_RS14395at 2684.592 kb on - strand, within SGL_RS14395at 2684.592 kb on - strand, within SGL_RS14395at 2684.730 kb on + strand, within SGL_RS14395at 2684.754 kb on + strand, within SGL_RS14395at 2684.779 kb on - strandat 2684.783 kb on + strandat 2684.783 kb on + strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.791 kb on - strandat 2684.796 kb on - strandat 2684.813 kb on - strandat 2684.835 kb on + strandat 2684.852 kb on + strandat 2685.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,682,509 - +0.3
2,682,584 - +0.3
2,682,594 - +0.5
2,682,645 - SGL_RS14385 0.14 +0.3
2,682,690 - SGL_RS14385 0.20 +0.4
2,682,690 - SGL_RS14385 0.20 +0.3
2,682,711 + SGL_RS14385 0.24 -0.1
2,682,907 + SGL_RS14385 0.53 +0.4
2,682,924 - SGL_RS14385 0.55 +0.7
2,683,045 - SGL_RS14385 0.73 +0.2
2,683,063 + SGL_RS14385 0.76 +0.5
2,683,071 - SGL_RS14385 0.77 +2.3
2,683,134 - SGL_RS14385 0.86 +0.2
2,683,134 - SGL_RS14385 0.86 +0.4
2,683,136 + SGL_RS14385 0.87 +0.8
2,683,136 + SGL_RS14385 0.87 -0.2
2,683,646 + SGL_RS14390 0.32 -0.1
2,683,653 - SGL_RS14390 0.33 -0.2
2,683,751 + SGL_RS14390 0.48 +0.1
2,683,908 + SGL_RS14390 0.73 +0.1
2,683,916 - SGL_RS14390 0.74 +0.1
2,683,933 + SGL_RS14390 0.77 +0.2
2,684,171 + +0.1
2,684,364 - SGL_RS14395 0.26 -0.3
2,684,457 - SGL_RS14395 0.41 -0.5
2,684,592 - SGL_RS14395 0.63 -0.5
2,684,592 - SGL_RS14395 0.63 -0.0
2,684,730 + SGL_RS14395 0.85 +0.2
2,684,754 + SGL_RS14395 0.89 -0.2
2,684,779 - +0.1
2,684,783 + +0.9
2,684,783 + +0.5
2,684,791 - -0.0
2,684,791 - -0.9
2,684,791 - +0.2
2,684,791 - +0.0
2,684,796 - -0.1
2,684,813 - +0.9
2,684,835 + +0.1
2,684,852 + -0.1
2,685,026 + +0.4

Or see this region's nucleotide sequence