Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18995 and SGL_RS19000 are separated by 123 nucleotides SGL_RS19000 and SGL_RS13285 are separated by 479 nucleotides SGL_RS13285 and SGL_RS13290 are separated by 151 nucleotides SGL_RS13290 and SGL_RS19005 are separated by 98 nucleotides
SGL_RS18995: SGL_RS18995 - IS4-like element IS4Sa family transposase, at 2,444,875 to 2,445,426
_RS18995
SGL_RS19000: SGL_RS19000 - hypothetical protein, at 2,445,550 to 2,445,915
_RS19000
SGL_RS13285: SGL_RS13285 - Sll0314/Alr1548 family TPR repeat-containing protein, at 2,446,395 to 2,447,339
_RS13285
SGL_RS13290: SGL_RS13290 - energy-coupling factor ABC transporter ATP-binding protein, at 2,447,491 to 2,448,123
_RS13290
SGL_RS19005: SGL_RS19005 - 30S ribosomal protein S21, at 2,448,222 to 2,448,404
_RS19005
Position (kb)
2446
2447
2448 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2445.711 kb on - strand, within SGL_RS19000 at 2445.757 kb on + strand, within SGL_RS19000 at 2445.760 kb on - strand, within SGL_RS19000 at 2445.800 kb on + strand, within SGL_RS19000 at 2446.281 kb on - strand at 2446.524 kb on + strand, within SGL_RS13285 at 2446.524 kb on + strand, within SGL_RS13285 at 2446.632 kb on - strand, within SGL_RS13285 at 2446.685 kb on + strand, within SGL_RS13285 at 2446.731 kb on - strand, within SGL_RS13285 at 2446.772 kb on - strand, within SGL_RS13285 at 2446.899 kb on - strand, within SGL_RS13285 at 2447.008 kb on - strand, within SGL_RS13285 at 2447.009 kb on - strand, within SGL_RS13285 at 2447.032 kb on - strand, within SGL_RS13285 at 2447.671 kb on - strand, within SGL_RS13290 at 2447.831 kb on + strand, within SGL_RS13290 at 2447.970 kb on - strand, within SGL_RS13290
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,445,711 - SGL_RS19000 0.44 +0.4 2,445,757 + SGL_RS19000 0.57 -0.2 2,445,760 - SGL_RS19000 0.57 +0.4 2,445,800 + SGL_RS19000 0.68 -0.0 2,446,281 - -0.0 2,446,524 + SGL_RS13285 0.14 -1.0 2,446,524 + SGL_RS13285 0.14 +0.4 2,446,632 - SGL_RS13285 0.25 -0.7 2,446,685 + SGL_RS13285 0.31 -1.4 2,446,731 - SGL_RS13285 0.36 -0.8 2,446,772 - SGL_RS13285 0.40 -1.1 2,446,899 - SGL_RS13285 0.53 -1.0 2,447,008 - SGL_RS13285 0.65 -1.5 2,447,009 - SGL_RS13285 0.65 -1.6 2,447,032 - SGL_RS13285 0.67 -1.1 2,447,671 - SGL_RS13290 0.28 -3.6 2,447,831 + SGL_RS13290 0.54 -2.5 2,447,970 - SGL_RS13290 0.76 -1.9
Or see this region's nucleotide sequence