Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11320

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11315 and SGL_RS11320 are separated by 46 nucleotidesSGL_RS11320 and SGL_RS11325 overlap by 4 nucleotides SGL_RS11315: SGL_RS11315 - Mur ligase family protein, at 2,000,815 to 2,002,194 _RS11315 SGL_RS11320: SGL_RS11320 - precorrin-8X methylmutase, at 2,002,241 to 2,002,894 _RS11320 SGL_RS11325: SGL_RS11325 - pitrilysin family protein, at 2,002,891 to 2,004,465 _RS11325 Position (kb) 2002 2003Strain fitness (log2 ratio) -3 -2 -1 0 1at 2002.208 kb on + strandat 2002.209 kb on + strandat 2002.603 kb on - strand, within SGL_RS11320at 2002.649 kb on + strand, within SGL_RS11320at 2002.783 kb on + strand, within SGL_RS11320at 2002.851 kb on - strandat 2003.216 kb on - strand, within SGL_RS11325at 2003.501 kb on + strand, within SGL_RS11325at 2003.525 kb on + strand, within SGL_RS11325at 2003.787 kb on - strand, within SGL_RS11325at 2003.837 kb on + strand, within SGL_RS11325

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,002,208 + -0.2
2,002,209 + +0.2
2,002,603 - SGL_RS11320 0.55 -2.3
2,002,649 + SGL_RS11320 0.62 -2.8
2,002,783 + SGL_RS11320 0.83 +0.7
2,002,851 - -2.7
2,003,216 - SGL_RS11325 0.21 -0.6
2,003,501 + SGL_RS11325 0.39 -1.8
2,003,525 + SGL_RS11325 0.40 -1.6
2,003,787 - SGL_RS11325 0.57 -0.8
2,003,837 + SGL_RS11325 0.60 -2.9

Or see this region's nucleotide sequence