Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10480 and SGL_RS10485 are separated by 220 nucleotides SGL_RS10485 and SGL_RS10490 are separated by 131 nucleotides SGL_RS10490 and SGL_RS10495 are separated by 32 nucleotides SGL_RS10495 and SGL_RS18890 are separated by 55 nucleotides SGL_RS18890 and SGL_RS10500 are separated by 9 nucleotides
SGL_RS10480: SGL_RS10480 - metallophosphoesterase family protein, at 1,823,968 to 1,824,732
_RS10480
SGL_RS10485: SGL_RS10485 - ComEA family DNA-binding protein, at 1,824,953 to 1,825,468
_RS10485
SGL_RS10490: SGL_RS10490 - precorrin-8X methylmutase, at 1,825,600 to 1,826,226
_RS10490
SGL_RS10495: SGL_RS10495 - EVE domain-containing protein, at 1,826,259 to 1,826,708
_RS10495
SGL_RS18890: SGL_RS18890 - 50S ribosomal protein L34, at 1,826,764 to 1,826,901
_RS18890
SGL_RS10500: SGL_RS10500 - ribonuclease P protein component, at 1,826,911 to 1,827,285
_RS10500
Position (kb) 1825
1826
1827 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1824.627 kb on + strand, within SGL_RS10480 at 1824.772 kb on + strand at 1824.857 kb on + strand at 1824.868 kb on + strand at 1824.876 kb on - strand at 1824.902 kb on + strand at 1825.418 kb on - strand at 1825.665 kb on + strand, within SGL_RS10490 at 1825.671 kb on - strand, within SGL_RS10490 at 1825.678 kb on - strand, within SGL_RS10490 at 1825.680 kb on + strand, within SGL_RS10490 at 1825.680 kb on + strand, within SGL_RS10490 at 1825.688 kb on - strand, within SGL_RS10490 at 1825.736 kb on - strand, within SGL_RS10490 at 1825.857 kb on + strand, within SGL_RS10490 at 1825.879 kb on + strand, within SGL_RS10490 at 1825.915 kb on + strand, within SGL_RS10490 at 1825.955 kb on - strand, within SGL_RS10490 at 1826.046 kb on - strand, within SGL_RS10490 at 1826.448 kb on - strand, within SGL_RS10495 at 1826.483 kb on + strand, within SGL_RS10495 at 1826.604 kb on + strand, within SGL_RS10495 at 1826.623 kb on + strand, within SGL_RS10495 at 1826.768 kb on - strand at 1826.927 kb on - strand at 1827.028 kb on + strand, within SGL_RS10500
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,824,627 + SGL_RS10480 0.86 -0.0 1,824,772 + +0.1 1,824,857 + +0.3 1,824,868 + -0.2 1,824,876 - +0.0 1,824,902 + -0.3 1,825,418 - -1.2 1,825,665 + SGL_RS10490 0.10 -1.6 1,825,671 - SGL_RS10490 0.11 -0.6 1,825,678 - SGL_RS10490 0.12 -0.6 1,825,680 + SGL_RS10490 0.13 -1.1 1,825,680 + SGL_RS10490 0.13 -3.2 1,825,688 - SGL_RS10490 0.14 -1.0 1,825,736 - SGL_RS10490 0.22 -1.6 1,825,857 + SGL_RS10490 0.41 -1.2 1,825,879 + SGL_RS10490 0.44 -1.9 1,825,915 + SGL_RS10490 0.50 -2.3 1,825,955 - SGL_RS10490 0.57 -1.0 1,826,046 - SGL_RS10490 0.71 -2.3 1,826,448 - SGL_RS10495 0.42 +0.3 1,826,483 + SGL_RS10495 0.50 -0.1 1,826,604 + SGL_RS10495 0.77 +0.4 1,826,623 + SGL_RS10495 0.81 -0.0 1,826,768 - -0.0 1,826,927 - +0.1 1,827,028 + SGL_RS10500 0.31 -0.6
Or see this region's nucleotide sequence