Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10070 and SGL_RS10075 are separated by 58 nucleotides SGL_RS10075 and SGL_RS10080 are separated by 127 nucleotides SGL_RS10080 and SGL_RS10085 are separated by 66 nucleotides
SGL_RS10070: SGL_RS10070 - cryptochrome/photolyase family protein, at 1,732,809 to 1,734,323
_RS10070
SGL_RS10075: SGL_RS10075 - A-adding tRNA nucleotidyltransferase, at 1,734,382 to 1,737,210
_RS10075
SGL_RS10080: SGL_RS10080 - photosystem II S4 domain protein, at 1,737,338 to 1,738,117
_RS10080
SGL_RS10085: SGL_RS10085 - ABC transporter permease, at 1,738,184 to 1,739,035
_RS10085
Position (kb)
1734
1735
1736
1737
1738 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1733.507 kb on - strand, within SGL_RS10070 at 1733.853 kb on + strand, within SGL_RS10070 at 1733.853 kb on + strand, within SGL_RS10070 at 1733.861 kb on - strand, within SGL_RS10070 at 1733.861 kb on - strand, within SGL_RS10070 at 1733.899 kb on + strand, within SGL_RS10070 at 1733.966 kb on - strand, within SGL_RS10070 at 1734.212 kb on + strand at 1735.774 kb on - strand, within SGL_RS10075 at 1735.840 kb on - strand, within SGL_RS10075 at 1736.579 kb on - strand, within SGL_RS10075 at 1737.344 kb on - strand at 1737.477 kb on + strand, within SGL_RS10080 at 1737.494 kb on + strand, within SGL_RS10080 at 1737.533 kb on + strand, within SGL_RS10080 at 1737.571 kb on - strand, within SGL_RS10080 at 1737.635 kb on + strand, within SGL_RS10080 at 1737.647 kb on + strand, within SGL_RS10080 at 1737.708 kb on + strand, within SGL_RS10080 at 1737.729 kb on + strand, within SGL_RS10080 at 1737.739 kb on + strand, within SGL_RS10080 at 1737.805 kb on + strand, within SGL_RS10080 at 1737.838 kb on + strand, within SGL_RS10080 at 1737.899 kb on - strand, within SGL_RS10080 at 1738.029 kb on - strand, within SGL_RS10080 at 1738.181 kb on + strand at 1738.184 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,733,507 - SGL_RS10070 0.46 +0.3 1,733,853 + SGL_RS10070 0.69 -0.2 1,733,853 + SGL_RS10070 0.69 -0.2 1,733,861 - SGL_RS10070 0.69 -0.1 1,733,861 - SGL_RS10070 0.69 +0.1 1,733,899 + SGL_RS10070 0.72 -0.2 1,733,966 - SGL_RS10070 0.76 +0.7 1,734,212 + -0.1 1,735,774 - SGL_RS10075 0.49 -0.2 1,735,840 - SGL_RS10075 0.52 -3.0 1,736,579 - SGL_RS10075 0.78 -2.0 1,737,344 - +1.5 1,737,477 + SGL_RS10080 0.18 -0.2 1,737,494 + SGL_RS10080 0.20 -0.1 1,737,533 + SGL_RS10080 0.25 +0.1 1,737,571 - SGL_RS10080 0.30 +0.2 1,737,635 + SGL_RS10080 0.38 -0.1 1,737,647 + SGL_RS10080 0.40 -0.0 1,737,708 + SGL_RS10080 0.47 -0.7 1,737,729 + SGL_RS10080 0.50 +0.6 1,737,739 + SGL_RS10080 0.51 +0.2 1,737,805 + SGL_RS10080 0.60 +0.2 1,737,838 + SGL_RS10080 0.64 +0.7 1,737,899 - SGL_RS10080 0.72 +0.2 1,738,029 - SGL_RS10080 0.89 +0.4 1,738,181 + -0.0 1,738,184 - +0.2
Or see this region's nucleotide sequence