Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10075

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10070 and SGL_RS10075 are separated by 58 nucleotidesSGL_RS10075 and SGL_RS10080 are separated by 127 nucleotidesSGL_RS10080 and SGL_RS10085 are separated by 66 nucleotides SGL_RS10070: SGL_RS10070 - cryptochrome/photolyase family protein, at 1,732,809 to 1,734,323 _RS10070 SGL_RS10075: SGL_RS10075 - A-adding tRNA nucleotidyltransferase, at 1,734,382 to 1,737,210 _RS10075 SGL_RS10080: SGL_RS10080 - photosystem II S4 domain protein, at 1,737,338 to 1,738,117 _RS10080 SGL_RS10085: SGL_RS10085 - ABC transporter permease, at 1,738,184 to 1,739,035 _RS10085 Position (kb) 1734 1735 1736 1737 1738Strain fitness (log2 ratio) -3 -2 -1 0 1at 1733.507 kb on - strand, within SGL_RS10070at 1733.853 kb on + strand, within SGL_RS10070at 1733.853 kb on + strand, within SGL_RS10070at 1733.861 kb on - strand, within SGL_RS10070at 1733.861 kb on - strand, within SGL_RS10070at 1733.899 kb on + strand, within SGL_RS10070at 1733.966 kb on - strand, within SGL_RS10070at 1734.212 kb on + strandat 1735.774 kb on - strand, within SGL_RS10075at 1735.840 kb on - strand, within SGL_RS10075at 1736.579 kb on - strand, within SGL_RS10075at 1737.344 kb on - strandat 1737.477 kb on + strand, within SGL_RS10080at 1737.494 kb on + strand, within SGL_RS10080at 1737.533 kb on + strand, within SGL_RS10080at 1737.571 kb on - strand, within SGL_RS10080at 1737.635 kb on + strand, within SGL_RS10080at 1737.647 kb on + strand, within SGL_RS10080at 1737.708 kb on + strand, within SGL_RS10080at 1737.729 kb on + strand, within SGL_RS10080at 1737.739 kb on + strand, within SGL_RS10080at 1737.805 kb on + strand, within SGL_RS10080at 1737.838 kb on + strand, within SGL_RS10080at 1737.899 kb on - strand, within SGL_RS10080at 1738.029 kb on - strand, within SGL_RS10080at 1738.181 kb on + strandat 1738.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,733,507 - SGL_RS10070 0.46 +0.3
1,733,853 + SGL_RS10070 0.69 -0.2
1,733,853 + SGL_RS10070 0.69 -0.2
1,733,861 - SGL_RS10070 0.69 -0.1
1,733,861 - SGL_RS10070 0.69 +0.1
1,733,899 + SGL_RS10070 0.72 -0.2
1,733,966 - SGL_RS10070 0.76 +0.7
1,734,212 + -0.1
1,735,774 - SGL_RS10075 0.49 -0.2
1,735,840 - SGL_RS10075 0.52 -3.0
1,736,579 - SGL_RS10075 0.78 -2.0
1,737,344 - +1.5
1,737,477 + SGL_RS10080 0.18 -0.2
1,737,494 + SGL_RS10080 0.20 -0.1
1,737,533 + SGL_RS10080 0.25 +0.1
1,737,571 - SGL_RS10080 0.30 +0.2
1,737,635 + SGL_RS10080 0.38 -0.1
1,737,647 + SGL_RS10080 0.40 -0.0
1,737,708 + SGL_RS10080 0.47 -0.7
1,737,729 + SGL_RS10080 0.50 +0.6
1,737,739 + SGL_RS10080 0.51 +0.2
1,737,805 + SGL_RS10080 0.60 +0.2
1,737,838 + SGL_RS10080 0.64 +0.7
1,737,899 - SGL_RS10080 0.72 +0.2
1,738,029 - SGL_RS10080 0.89 +0.4
1,738,181 + -0.0
1,738,184 - +0.2

Or see this region's nucleotide sequence