Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10010

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10005 and SGL_RS10010 are separated by 224 nucleotidesSGL_RS10010 and SGL_RS10015 are separated by 185 nucleotides SGL_RS10005: SGL_RS10005 - 30S ribosomal protein S2, at 1,722,160 to 1,722,969 _RS10005 SGL_RS10010: SGL_RS10010 - tRNA-Ile, at 1,723,194 to 1,723,266 _RS10010 SGL_RS10015: SGL_RS10015 - calcium/proton exchanger, at 1,723,452 to 1,724,570 _RS10015 Position (kb) 1723 1724Strain fitness (log2 ratio) -1 0 1at 1723.356 kb on - strandat 1723.358 kb on + strandat 1723.510 kb on - strandat 1723.581 kb on + strand, within SGL_RS10015at 1723.612 kb on - strand, within SGL_RS10015at 1723.653 kb on + strand, within SGL_RS10015at 1723.726 kb on - strand, within SGL_RS10015at 1723.726 kb on - strand, within SGL_RS10015at 1723.741 kb on + strand, within SGL_RS10015at 1723.911 kb on - strand, within SGL_RS10015at 1723.956 kb on + strand, within SGL_RS10015at 1723.966 kb on + strand, within SGL_RS10015at 1724.002 kb on - strand, within SGL_RS10015at 1724.151 kb on - strand, within SGL_RS10015at 1724.157 kb on - strand, within SGL_RS10015at 1724.182 kb on + strand, within SGL_RS10015at 1724.207 kb on + strand, within SGL_RS10015at 1724.232 kb on + strand, within SGL_RS10015at 1724.238 kb on + strand, within SGL_RS10015

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,723,356 - +0.2
1,723,358 + +0.5
1,723,510 - -0.2
1,723,581 + SGL_RS10015 0.12 -0.2
1,723,612 - SGL_RS10015 0.14 +0.3
1,723,653 + SGL_RS10015 0.18 -0.3
1,723,726 - SGL_RS10015 0.24 -0.6
1,723,726 - SGL_RS10015 0.24 +0.0
1,723,741 + SGL_RS10015 0.26 -0.1
1,723,911 - SGL_RS10015 0.41 +0.1
1,723,956 + SGL_RS10015 0.45 +0.0
1,723,966 + SGL_RS10015 0.46 +1.0
1,724,002 - SGL_RS10015 0.49 -0.3
1,724,151 - SGL_RS10015 0.62 +0.2
1,724,157 - SGL_RS10015 0.63 +0.2
1,724,182 + SGL_RS10015 0.65 +0.5
1,724,207 + SGL_RS10015 0.67 +0.4
1,724,232 + SGL_RS10015 0.70 +0.6
1,724,238 + SGL_RS10015 0.70 +0.6

Or see this region's nucleotide sequence