Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08895 and SGL_RS08900 are separated by 105 nucleotides SGL_RS08900 and SGL_RS08905 are separated by 161 nucleotides SGL_RS08905 and SGL_RS08910 are separated by 78 nucleotides SGL_RS08910 and SGL_RS08915 are separated by 95 nucleotides
SGL_RS08895: SGL_RS08895 - FAD-dependent oxidoreductase, at 1,504,818 to 1,506,770
_RS08895
SGL_RS08900: SGL_RS08900 - DUF6335 family protein, at 1,506,876 to 1,507,319
_RS08900
SGL_RS08905: SGL_RS08905 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,507,481 to 1,508,092
_RS08905
SGL_RS08910: SGL_RS08910 - hypothetical protein, at 1,508,171 to 1,508,386
_RS08910
SGL_RS08915: SGL_RS08915 - SpoIID/LytB domain-containing protein, at 1,508,482 to 1,509,768
_RS08915
Position (kb) 1507
1508
1509 Strain fitness (log2 ratio) -2
-1
0
1 at 1506.537 kb on + strand, within SGL_RS08895 at 1506.702 kb on - strand at 1506.826 kb on + strand at 1506.849 kb on + strand at 1506.934 kb on - strand, within SGL_RS08900 at 1507.187 kb on + strand, within SGL_RS08900 at 1507.255 kb on + strand, within SGL_RS08900 at 1507.718 kb on + strand, within SGL_RS08905 at 1507.726 kb on - strand, within SGL_RS08905 at 1508.129 kb on - strand at 1508.129 kb on - strand at 1508.195 kb on + strand, within SGL_RS08910 at 1508.644 kb on - strand, within SGL_RS08915 at 1508.713 kb on + strand, within SGL_RS08915 at 1508.713 kb on + strand, within SGL_RS08915 at 1508.721 kb on - strand, within SGL_RS08915 at 1508.754 kb on + strand, within SGL_RS08915 at 1508.805 kb on + strand, within SGL_RS08915 at 1508.906 kb on - strand, within SGL_RS08915 at 1508.986 kb on - strand, within SGL_RS08915 at 1509.053 kb on + strand, within SGL_RS08915
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,506,537 + SGL_RS08895 0.88 -0.1 1,506,702 - -0.6 1,506,826 + +0.3 1,506,849 + -0.6 1,506,934 - SGL_RS08900 0.13 -0.5 1,507,187 + SGL_RS08900 0.70 +0.1 1,507,255 + SGL_RS08900 0.85 -0.4 1,507,718 + SGL_RS08905 0.39 -1.6 1,507,726 - SGL_RS08905 0.40 -2.6 1,508,129 - -0.0 1,508,129 - +0.6 1,508,195 + SGL_RS08910 0.11 +0.0 1,508,644 - SGL_RS08915 0.13 +0.4 1,508,713 + SGL_RS08915 0.18 -0.0 1,508,713 + SGL_RS08915 0.18 +0.0 1,508,721 - SGL_RS08915 0.19 +0.7 1,508,754 + SGL_RS08915 0.21 +0.2 1,508,805 + SGL_RS08915 0.25 -0.0 1,508,906 - SGL_RS08915 0.33 +0.3 1,508,986 - SGL_RS08915 0.39 +0.3 1,509,053 + SGL_RS08915 0.44 +0.4
Or see this region's nucleotide sequence