Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08785 and SGL_RS08790 are separated by 126 nucleotides SGL_RS08790 and SGL_RS08795 overlap by 11 nucleotides
SGL_RS08785: SGL_RS08785 - GuaB3 family IMP dehydrogenase-related protein, at 1,475,555 to 1,476,718
_RS08785
SGL_RS08790: SGL_RS08790 - carbohydrate ABC transporter permease, at 1,476,845 to 1,477,657
_RS08790
SGL_RS08795: SGL_RS08795 - trans-acting enoyl reductase family protein, at 1,477,647 to 1,478,891
_RS08795
Position (kb)
1476
1477
1478 Strain fitness (log2 ratio)
-2
-1
0
1 at 1476.753 kb on + strand at 1476.783 kb on - strand at 1476.791 kb on + strand at 1476.799 kb on - strand at 1476.814 kb on + strand at 1476.952 kb on - strand, within SGL_RS08790 at 1477.040 kb on + strand, within SGL_RS08790 at 1477.142 kb on + strand, within SGL_RS08790 at 1477.501 kb on + strand, within SGL_RS08790 at 1477.634 kb on - strand at 1477.685 kb on - strand at 1477.773 kb on + strand, within SGL_RS08795 at 1477.901 kb on - strand, within SGL_RS08795 at 1477.942 kb on - strand, within SGL_RS08795 at 1478.127 kb on - strand, within SGL_RS08795 at 1478.143 kb on - strand, within SGL_RS08795 at 1478.214 kb on - strand, within SGL_RS08795 at 1478.273 kb on + strand, within SGL_RS08795 at 1478.370 kb on - strand, within SGL_RS08795 at 1478.477 kb on - strand, within SGL_RS08795 at 1478.545 kb on + strand, within SGL_RS08795
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,476,753 + -0.3 1,476,783 - -1.0 1,476,791 + +0.1 1,476,799 - -0.5 1,476,814 + +0.8 1,476,952 - SGL_RS08790 0.13 -2.2 1,477,040 + SGL_RS08790 0.24 -0.7 1,477,142 + SGL_RS08790 0.37 -2.5 1,477,501 + SGL_RS08790 0.81 -0.0 1,477,634 - +0.2 1,477,685 - +0.1 1,477,773 + SGL_RS08795 0.10 +0.1 1,477,901 - SGL_RS08795 0.20 -0.2 1,477,942 - SGL_RS08795 0.24 -0.0 1,478,127 - SGL_RS08795 0.39 +0.0 1,478,143 - SGL_RS08795 0.40 -0.1 1,478,214 - SGL_RS08795 0.46 -0.5 1,478,273 + SGL_RS08795 0.50 -0.1 1,478,370 - SGL_RS08795 0.58 -0.6 1,478,477 - SGL_RS08795 0.67 -0.0 1,478,545 + SGL_RS08795 0.72 -0.1
Or see this region's nucleotide sequence