Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08640 and SGL_RS18805 are separated by 32 nucleotides SGL_RS18805 and SGL_RS08650 are separated by 38 nucleotides SGL_RS08650 and SGL_RS08655 are separated by 257 nucleotides
SGL_RS08640: SGL_RS08640 - NAD(P)/FAD-dependent oxidoreductase, at 1,444,115 to 1,445,392
_RS08640
SGL_RS18805: SGL_RS18805 - type II toxin-antitoxin system HicA family toxin, at 1,445,425 to 1,445,835
_RS18805
SGL_RS08650: SGL_RS08650 - S-layer homology domain-containing protein, at 1,445,874 to 1,446,839
_RS08650
SGL_RS08655: SGL_RS08655 - cyanophycinase, at 1,447,097 to 1,447,912
_RS08655
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-1
0
1 at 1444.901 kb on - strand, within SGL_RS08640 at 1444.943 kb on + strand, within SGL_RS08640 at 1444.946 kb on - strand, within SGL_RS08640 at 1444.951 kb on - strand, within SGL_RS08640 at 1444.951 kb on - strand, within SGL_RS08640 at 1445.305 kb on - strand at 1445.381 kb on + strand at 1445.395 kb on - strand at 1445.582 kb on + strand, within SGL_RS18805 at 1445.612 kb on + strand, within SGL_RS18805 at 1446.303 kb on + strand, within SGL_RS08650 at 1446.347 kb on - strand, within SGL_RS08650 at 1446.347 kb on - strand, within SGL_RS08650 at 1446.397 kb on + strand, within SGL_RS08650 at 1446.699 kb on - strand, within SGL_RS08650 at 1446.712 kb on - strand, within SGL_RS08650 at 1446.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,444,901 - SGL_RS08640 0.62 -0.1 1,444,943 + SGL_RS08640 0.65 -0.5 1,444,946 - SGL_RS08640 0.65 +0.3 1,444,951 - SGL_RS08640 0.65 -0.2 1,444,951 - SGL_RS08640 0.65 -0.2 1,445,305 - -0.3 1,445,381 + -1.0 1,445,395 - +0.4 1,445,582 + SGL_RS18805 0.38 -0.2 1,445,612 + SGL_RS18805 0.45 +0.3 1,446,303 + SGL_RS08650 0.44 -1.1 1,446,347 - SGL_RS08650 0.49 -1.0 1,446,347 - SGL_RS08650 0.49 -0.9 1,446,397 + SGL_RS08650 0.54 -1.1 1,446,699 - SGL_RS08650 0.85 +0.3 1,446,712 - SGL_RS08650 0.87 -1.4 1,446,795 - -0.3
Or see this region's nucleotide sequence