Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07900 and SGL_RS07905 are separated by 141 nucleotides SGL_RS07905 and SGL_RS07910 are separated by 122 nucleotides SGL_RS07910 and SGL_RS07915 are separated by 74 nucleotides SGL_RS07915 and SGL_RS07920 are separated by 122 nucleotides
SGL_RS07900: SGL_RS07900 - DUF362 domain-containing protein, at 1,289,389 to 1,290,354
_RS07900
SGL_RS07905: SGL_RS07905 - DUF29 domain-containing protein, at 1,290,496 to 1,290,957
_RS07905
SGL_RS07910: SGL_RS07910 - DUF29 domain-containing protein, at 1,291,080 to 1,291,556
_RS07910
SGL_RS07915: SGL_RS07915 - DUF29 domain-containing protein, at 1,291,631 to 1,292,092
_RS07915
SGL_RS07920: SGL_RS07920 - DUF29 domain-containing protein, at 1,292,215 to 1,292,679
_RS07920
Position (kb) 1291
1292 Strain fitness (log2 ratio) -1
0
1 at 1290.143 kb on + strand, within SGL_RS07900 at 1290.220 kb on - strand, within SGL_RS07900 at 1290.263 kb on + strand at 1290.265 kb on + strand at 1290.455 kb on + strand at 1290.463 kb on - strand at 1290.463 kb on - strand at 1290.475 kb on - strand at 1291.442 kb on + strand, within SGL_RS07910 at 1291.472 kb on + strand, within SGL_RS07910 at 1291.577 kb on + strand at 1291.881 kb on - strand, within SGL_RS07915 at 1292.353 kb on + strand, within SGL_RS07920
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,290,143 + SGL_RS07900 0.78 -0.2 1,290,220 - SGL_RS07900 0.86 +0.0 1,290,263 + +0.2 1,290,265 + +0.1 1,290,455 + -0.2 1,290,463 - +0.1 1,290,463 - -0.2 1,290,475 - -1.0 1,291,442 + SGL_RS07910 0.76 -0.1 1,291,472 + SGL_RS07910 0.82 +0.3 1,291,577 + -0.4 1,291,881 - SGL_RS07915 0.54 -0.2 1,292,353 + SGL_RS07920 0.30 +0.2
Or see this region's nucleotide sequence